Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_24791 Corylus avellana HOM05D003365 ORTHO05D003899 5.3e-74 280.8 129 100.0
QL09p054597 Quercus lobata HOM05D003365 ORTHO05D003899 2.6e-36 155.6 96 72.9
CiPaw.03G149600 Carya illinoinensis HOM05D003365 ORTHO05D003899 2.2e-35 152.5 93 71.0
Actinidia09483 Actinidia chinensis HOM05D003365 ORTHO05D003899 3.7e-35 151.8 113 65.5
Sed0009490 Sechium edule HOM05D003365 ORTHO05D003899 1.2e-33 146.7 93 68.8
Cpa.g.sc8.160 Carica papaya HOM05D003365 ORTHO05D003899 1.6e-33 146.4 88 72.7
Lj3g0005766 Lotus japonicus HOM05D003365 ORTHO05D003899 1.6e-33 146.4 107 63.6
Cc01_g17090 Coffea canephora HOM05D003365 ORTHO05D003899 3.5e-33 145.2 86 75.6
MSTRG.18389 Avicennia marina HOM05D003365 ORTHO05D003899 5.9e-33 144.4 96 69.8
Psat0s1248g0040 Pisum sativum HOM05D003365 ORTHO05D003899 7.7e-33 144.1 100 65.0
vmacro14754 Vaccinium macrocarpon HOM05D003365 ORTHO05D003899 1.0e-32 143.7 90 75.6
ClCG09G009060 Citrullus lanatus HOM05D003365 ORTHO05D003899 1.7e-32 142.9 93 65.6
Medtr4g022320 Medicago truncatula HOM05D003365 ORTHO05D003899 2.3e-32 142.5 95 66.3
TPR.G5612 Trifolium pratense HOM05D003365 ORTHO05D003899 2.3e-32 142.5 92 69.6
DCAR_018569 Daucus carota HOM05D003365 ORTHO05D003899 8.6e-32 140.6 89 68.5
Dinv04652 Davidia involucrata HOM05D003365 ORTHO05D003899 8.6e-32 140.6 85 74.1
Migut.D00534 Erythranthe guttata HOM05D003365 ORTHO05D003899 1.1e-31 140.2 89 69.7
TWI75G0239 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 1.1e-31 140.2 93 66.7
Sed0009580 Sechium edule HOM05D003365 ORTHO05D003899 1.5e-31 139.8 92 67.4
Cc01_g17080 Coffea canephora HOM05D003365 ORTHO05D003899 1.9e-31 139.4 86 74.4
Lalb_Chr19g0125591 Lupinus albus HOM05D003365 ORTHO05D003899 2.5e-31 139.0 96 67.7
TPR.G5559 Trifolium pratense HOM05D003365 ORTHO05D003899 3.2e-31 138.7 92 67.4
Lj2C1132T2 Lonicera japonica HOM05D003365 ORTHO05D003899 4.2e-31 138.3 89 65.2
Lalb_Chr12g0209691 Lupinus albus HOM05D003365 ORTHO05D003899 4.2e-31 138.3 88 67.0
RcHm_v2.0_Chr6g0284931 Rosa chinensis HOM05D003365 ORTHO05D003899 5.5e-31 137.9 92 65.2
TWI36G1690 Tripterygium wilfordii HOM05D003365 ORTHO05D003899 5.5e-31 137.9 92 65.2
EL10Ac7g17831 Beta vulgaris HOM05D003365 ORTHO05D003899 7.2e-31 137.5 95 66.3
Duzib138G0916 Durio zibethinus HOM05D003365 ORTHO05D003899 9.5e-31 137.1 86 70.9
Aa31sc154G60 Aethionema arabicum HOM05D003365 ORTHO05D003899 1.2e-30 136.7 96 63.5
Gohir.A11G137500 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.2e-30 136.7 86 66.3
Gorai.007G154100 Gossypium raimondii HOM05D003365 ORTHO05D003899 1.2e-30 136.7 86 66.3
Medtr7g058430 Medicago truncatula HOM05D003365 ORTHO05D003899 1.2e-30 136.7 91 65.9
MELO3C021013.2 Cucumis melo HOM05D003365 ORTHO05D003899 1.6e-30 136.3 92 63.0
Phvul.008G125500 Phaseolus vulgaris HOM05D003365 ORTHO05D003899 1.6e-30 136.3 88 69.3
Prupe.8G203400 Prunus persica HOM05D003365 ORTHO05D003899 2.8e-30 135.6 82 74.4
VMungo1383G0959 Vigna mungo HOM05D003365 ORTHO05D003899 3.6e-30 135.2 100 64.0
Thhalv10002569m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 8.0e-30 134.0 103 57.3
MD10G1165000 Malus domestica HOM05D003365 ORTHO05D003899 8.0e-30 134.0 80 75.0
Manes.12G045750 Manihot esculenta HOM05D003365 ORTHO05D003899 8.0e-30 134.0 87 66.7
Medtr7g058450 Medicago truncatula HOM05D003365 ORTHO05D003899 8.0e-30 134.0 100 63.0
THA.LOC104808785 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 8.0e-30 134.0 92 63.0
Glyma.18G171400 Glycine max HOM05D003365 ORTHO05D003899 1.0e-29 133.7 89 66.3
Ciclev10023514m.g Citrus clementina HOM05D003365 ORTHO05D003899 1.8e-29 132.9 95 65.3
Gohir.D11G143900 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.8e-29 132.9 86 64.0
Hund05541 Selenicereus undatus HOM05D003365 ORTHO05D003899 1.8e-29 132.9 84 67.9
Hund05542 Selenicereus undatus HOM05D003365 ORTHO05D003899 1.8e-29 132.9 84 67.9
CANSAT01G3135 Cannabis sativa HOM05D003365 ORTHO05D003899 4.0e-29 131.7 87 70.1
Sp3g22540 Schrenkiella parvula HOM05D003365 ORTHO05D003899 4.0e-29 131.7 96 61.5
SpUn0027_0020 Schrenkiella parvula HOM05D003365 ORTHO05D003899 4.0e-29 131.7 96 61.5
TPR.G9032 Trifolium pratense HOM05D003365 ORTHO05D003899 4.0e-29 131.7 89 66.3
AT3G24800 Arabidopsis thaliana HOM05D003365 ORTHO05D003899 5.2e-29 131.3 97 59.8
Psat3g144800 Pisum sativum HOM05D003365 ORTHO05D003899 6.8e-29 131.0 88 67.0
Glyma.08G354400 Glycine max HOM05D003365 ORTHO05D003899 8.8e-29 130.6 89 64.0
Nn3g19957 Nelumbo nucifera HOM05D003365 ORTHO05D003899 8.8e-29 130.6 88 65.9
Gohir.A03G094000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.2e-28 130.2 85 63.5
Gohir.D02G123200 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.2e-28 130.2 85 63.5
Gorai.005G131100 Gossypium raimondii HOM05D003365 ORTHO05D003899 1.2e-28 130.2 85 63.5
Sc05g0002210 Simmondsia chinensis HOM05D003365 ORTHO05D003899 1.2e-28 130.2 90 63.3
Potri.002G241900 Populus trichocarpa HOM05D003365 ORTHO05D003899 2.6e-28 129.0 124 54.8
Carub.0003s2521 Capsella rubella HOM05D003365 ORTHO05D003899 3.4e-28 128.6 90 61.1
AUR62008908 Chenopodium quinoa HOM05D003365 ORTHO05D003899 3.4e-28 128.6 83 67.5
AL3G40570 Arabidopsis lyrata HOM05D003365 ORTHO05D003899 5.7e-28 127.9 97 58.8
RcHm_v2.0_Chr4g0386021 Rosa chinensis HOM05D003365 ORTHO05D003899 5.7e-28 127.9 96 60.4
Ca_30737_v3 Cicer arietinum L. HOM05D003365 ORTHO05D003899 9.8e-28 127.1 88 63.6
Eucgr.K02172 Eucalyptus grandis HOM05D003365 ORTHO05D003899 9.8e-28 127.1 89 66.3
BcaB03g14565 Brassica carinata HOM05D003365 ORTHO05D003899 1.3e-27 126.7 96 57.3
THA.LOC104804607 Tarenaya hassleriana HOM05D003365 ORTHO05D003899 1.3e-27 126.7 92 58.7
BcaB06g26698 Brassica carinata HOM05D003365 ORTHO05D003899 2.2e-27 125.9 93 60.2
arahy.Tifrunner.gnm1.ann1.2FCG8X Arachis hypogaea HOM05D003365 ORTHO05D003899 2.8e-27 125.6 85 68.2
A07p07410 Brassica napus HOM05D003365 ORTHO05D003899 2.8e-27 125.6 93 60.2
BraA07t28528Z Brassica rapa HOM05D003365 ORTHO05D003899 2.8e-27 125.6 93 60.2
CsaV3_7G025900 Cucumis sativus L. HOM05D003365 ORTHO05D003899 2.8e-27 125.6 93 59.1
Atru.chr4.1724 Acer truncatum HOM05D003365 ORTHO05D003899 3.7e-27 125.2 92 59.8
A03p43940 Brassica napus HOM05D003365 ORTHO05D003899 3.7e-27 125.2 96 57.3
BraA03t13524Z Brassica rapa HOM05D003365 ORTHO05D003899 3.7e-27 125.2 96 57.3
CSS0049236 Camellia sinensis var. sinensis HOM05D003365 ORTHO05D003899 3.7e-27 125.2 116 54.3
Thecc.01G226500 Theobroma cacao HOM05D003365 ORTHO05D003899 3.7e-27 125.2 91 61.5
GSVIVG01028643001 Vitis vinifera HOM05D003365 ORTHO05D003899 4.9e-27 124.8 73 76.7
arahy.Tifrunner.gnm1.ann1.E2CR6D Arachis hypogaea HOM05D003365 ORTHO05D003899 6.3e-27 124.4 79 69.6
BolC3t17715H Brassica oleracea HOM05D003365 ORTHO05D003899 6.3e-27 124.4 96 57.3
COL.COLO4_10278 Corchorus olitorius HOM05D003365 ORTHO05D003899 6.3e-27 124.4 131 47.3
MBI10_g18941_MAGBIO Magnolia biondii HOM05D003365 ORTHO05D003899 6.3e-27 124.4 94 60.6
Lj1g0007670 Lotus japonicus HOM05D003365 ORTHO05D003899 8.3e-27 124.0 88 62.5
PSO017G5557 Papaver somniferum HOM05D003365 ORTHO05D003899 8.3e-27 124.0 82 64.6
CARHR101150 Cardamine hirsuta HOM05D003365 ORTHO05D003899 1.1e-26 123.6 89 61.8
HanXRQChr01g0022261 Helianthus annuus HOM05D003365 ORTHO05D003899 1.1e-26 123.6 88 62.5
Oeu022364.1 Olea europaea HOM05D003365 ORTHO05D003899 1.4e-26 123.2 117 47.9
C07p11180 Brassica napus HOM05D003365 ORTHO05D003899 1.8e-26 122.9 93 60.2
Aqoxy2G03887 Aquilegia oxysepala HOM05D003365 ORTHO05D003899 3.1e-26 122.1 91 64.8
Lsat_1_v5_gn_5_179340 Lactuca sativa HOM05D003365 ORTHO05D003899 3.1e-26 122.1 86 60.5
TAR365G1159 Trochodendron aralioides HOM05D003365 ORTHO05D003899 3.1e-26 122.1 72 75.0
BcaC06g35760 Brassica carinata HOM05D003365 ORTHO05D003899 4.1e-26 121.7 97 56.7
BolC7t41590H Brassica oleracea HOM05D003365 ORTHO05D003899 4.1e-26 121.7 97 56.7
Oeu006726.3 Olea europaea HOM05D003365 ORTHO05D003899 4.1e-26 121.7 86 59.3
Thecc.04G205700 Theobroma cacao HOM05D003365 ORTHO05D003899 5.4e-26 121.3 85 61.2
Potri.003G178700 Populus trichocarpa HOM05D003365 ORTHO05D003899 9.2e-26 120.6 95 54.7
BcaC01g03254 Brassica carinata HOM05D003365 ORTHO05D003899 1.2e-25 120.2 96 55.2
C03p54290 Brassica napus HOM05D003365 ORTHO05D003899 1.2e-25 120.2 96 55.2
Ciclev10004856m.g Citrus clementina HOM05D003365 ORTHO05D003899 1.2e-25 120.2 82 61.0
Duzib151G0831 Durio zibethinus HOM05D003365 ORTHO05D003899 1.2e-25 120.2 84 59.5
FAN12G0224 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.2e-25 120.2 94 57.4
FAN12G1463 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.2e-25 120.2 94 57.4
Gorai.006G221600 Gossypium raimondii HOM05D003365 ORTHO05D003899 1.2e-25 120.2 100 53.0
HanXRQChr15g0468271 Helianthus annuus HOM05D003365 ORTHO05D003899 1.2e-25 120.2 91 57.1
Gohir.A09G204300 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.6e-25 119.8 93 55.9
Gohir.D09G198000 Gossypium hirsutum HOM05D003365 ORTHO05D003899 1.6e-25 119.8 93 55.9
Aa31LG4G13410 Aethionema arabicum HOM05D003365 ORTHO05D003899 2.0e-25 119.4 96 59.4
FvH4_4g00570 Fragaria vesca HOM05D003365 ORTHO05D003899 2.0e-25 119.4 94 57.4
MD04G1005700 Malus domestica HOM05D003365 ORTHO05D003899 2.0e-25 119.4 83 59.0
Prupe.1G006100 Prunus persica HOM05D003365 ORTHO05D003899 2.7e-25 119.0 84 61.9
Solyc09g091790.3 Solanum lycopersicum HOM05D003365 ORTHO05D003899 2.7e-25 119.0 102 52.0
PGSC0003DMG400029661 Solanum tuberosum HOM05D003365 ORTHO05D003899 2.7e-25 119.0 102 51.0
Sabra03G0131000 Salix brachista HOM05D003365 ORTHO05D003899 3.5e-25 118.6 82 61.0
Sopen09g034680 Solanum pennellii HOM05D003365 ORTHO05D003899 3.5e-25 118.6 102 51.0
CAN.G500.11 Capsicum annuum HOM05D003365 ORTHO05D003899 7.8e-25 117.5 86 52.3
SGA_v2.0_scaffold216G42379 Striga asiatica HOM05D003365 ORTHO05D003899 1.7e-24 116.3 86 58.1
HanXRQChr09g0249321 Helianthus annuus HOM05D003365 ORTHO05D003899 2.3e-24 115.9 92 54.3
HPP92_012644 Vanilla planifolia HOM05D003365 ORTHO05D003899 2.3e-24 115.9 85 60.0
HanXRQChr01g0022241 Helianthus annuus HOM05D003365 ORTHO05D003899 3.8e-24 115.2 103 53.4
FAN22G2379 Fragaria x ananassa HOM05D003365 ORTHO05D003899 5.0e-24 114.8 107 50.5
Migut.N00374 Erythranthe guttata HOM05D003365 ORTHO05D003899 6.6e-24 114.4 84 54.8
Nitab4.5_0002428g0050 Nicotiana tabacum HOM05D003365 ORTHO05D003899 1.1e-23 113.6 82 54.9
Potri.001G049300 Populus trichocarpa HOM05D003365 ORTHO05D003899 1.1e-23 113.6 82 59.8
Rhsim09G0055000 Rhododendron simsii HOM05D003365 ORTHO05D003899 1.1e-23 113.6 85 62.4
Oeu022255.1 Olea europaea HOM05D003365 ORTHO05D003899 2.5e-23 112.5 82 61.0
MSTRG.24620 Avicennia marina HOM05D003365 ORTHO05D003899 3.3e-23 112.1 82 58.5
Eucgr.L00369 Eucalyptus grandis HOM05D003365 ORTHO05D003899 7.3e-23 110.9 94 55.3
SHI01314 Sapria himalayana HOM05D000023 ORTHO05D000014 9.5e-23 110.5 76 59.2
Os02g0621500 Oryza sativa ssp. japonica HOM05D003365 ORTHO05D003899 1.2e-22 110.2 78 61.5
Zm00001eb247460 Zea mays HOM05D003365 ORTHO05D003899 5.2e-21 104.8 78 59.0
CDE01G0789 Ceratophyllum demersum HOM05D003365 ORTHO05D003899 6.8e-21 104.4 90 52.2
ECA248G1941 Erigeron canadensis HOM05D003365 ORTHO05D000452 1.3e-19 100.1 72 61.1
ATR0736G227 Amborella trichopoda HOM05D003365 ORTHO05D003899 1.1e-18 97.1 80 51.2
AagrBONN_evm.TU.Sc2ySwM_368.1757 Anthoceros agrestis HOM05D003365 ORTHO05D003899 1.1e-18 97.1 75 54.7
FAN17G1699 Fragaria x ananassa HOM05D003365 ORTHO05D003899 1.4e-18 96.7 67 61.2
Pp3c1_21360 Physcomitrium patens HOM05D003365 ORTHO05D003899 1.4e-18 96.7 74 54.1
Nitab4.5_0004214g0020 Nicotiana tabacum HOM05D003365 ORTHO05D003899 7.0e-18 94.4 68 52.9
SEGI_11490 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 5.9e-17 91.3 88 43.2
SEGI_15541 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 7.8e-17 90.9 75 48.0
Pp3c2_17040 Physcomitrium patens HOM05D003365 ORTHO05D003899 1.0e-16 90.5 82 50.0
Peaxi162Scf00047g00640 Petunia axillaris HOM05D003365 ORTHO05D003899 3.0e-16 89.0 95 43.2
SEGI_02131 Sequoiadendron giganteum HOM05D003365 ORTHO05D003899 1.9e-15 86.3 75 48.0
Pp3c11_26150 Physcomitrium patens HOM05D003365 ORTHO05D003899 3.6e-14 82.0 75 48.0
Lsat_1_v5_gn_1_72781 Lactuca sativa HOM05D003365 ORTHO05D003899 8.0e-14 80.9 56 58.9
Pp3c7_700 Physcomitrium patens HOM05D003365 ORTHO05D003899 8.0e-14 80.9 78 44.9
Pp3c2_34310 Physcomitrium patens HOM05D003365 ORTHO05D003899 5.2e-13 78.2 78 46.2
MCO16G654 Micromonas commoda HOM05D003365 ORTHO05D003899 2.6e-12 75.9 71 46.5
CBR_g39028 Chara braunii HOM05D003365 ORTHO05D003899 1.7e-11 73.2 76 40.8
FvH4_2g19100 Fragaria vesca HOM05D003365 ORTHO05D003899 1.4e-10 70.1 53 62.3
Actinidia23724 Actinidia chinensis HOM05D003365 ORTHO05D003899 1.9e-10 69.7 67 52.2
Haze_24790 Corylus avellana HOM05D003365 ORTHO05D003899 2.4e-10 69.3 39 82.1
Thhalv10002593m.g Eutrema salsugineum HOM05D003365 ORTHO05D003899 1.6e-09 66.6 42 64.3


User provided reference genes

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