Gene: Sopen09g034680

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g034680
  • Transcript Identifier Sopen09g034680.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 82715801-82722279 : negative

Gene Family Information

  • ID HOM05D003365
  • #Genes/#Species 203/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g034680.1

Descriptions

  • Description Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis). | proteolysis 1 (PRT1) | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, ZZ-type | BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071596
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process via the N-end rule pathway AT3G24800
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT3G24800
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT3G24800

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT3G24800
GO:0061630
ISO
PLAZA Integrative Orthologyubiquitin protein ligase activity AT3G24800

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000151
ISO
PLAZA Integrative Orthologyubiquitin ligase complex AT3G24800

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR043145 Zinc finger, ZZ-type superfamily
IPR001841 Zinc finger, RING-type
IPR000433 Zinc finger, ZZ-type
IPR027370 RING-type zinc-finger, LisH dimerisation motif
Mapman id Description
19.2.1.2.2.2 Protein homeostasis.ubiquitin-proteasome system.N-degron pathways.Arg/N-degron pathway.Arg/N-recognin activities.type-II-residues E3 ubiquitin ligase (PRT1)