Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 2012.3 1043 100.0
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1263.4 1043 67.6
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1215.7 1142 60.9
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1203.3 1179 58.2
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1122.5 1140 55.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1109.0 1134 56.4
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1105.9 1142 55.6
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1099.3 1139 55.9
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1098.2 1157 54.4
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1095.5 1142 55.2
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1093.2 1140 54.9
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1092.8 1141 55.5
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1092.8 1141 55.5
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1091.6 1148 55.5
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1091.3 1140 54.9
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1089.7 1148 55.5
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1088.9 1148 55.4
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1088.2 1142 55.0
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1087.0 1139 55.5
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1086.2 1148 54.5
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1085.9 1139 55.3
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1084.3 1143 55.2
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1084.3 1139 55.4
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1083.9 1141 55.2
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1083.6 1140 54.2
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1080.5 1141 54.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1079.3 1142 54.6
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1078.9 1148 55.1
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1077.8 1142 55.3
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1077.4 1143 54.9
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1077.4 1146 54.7
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1077.0 1142 54.4
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1076.2 1142 54.5
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 7.1e-312 1073.9 1144 54.3
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 7.1e-312 1073.5 1139 54.7
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 3.6e-311 1071.6 1141 54.7
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 1.4e-310 1069.7 1141 54.6
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 1.4e-310 1069.7 1140 54.0
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 3.5e-309 1065.1 1040 57.6
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 4.6e-309 1064.7 1142 54.5
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 7.8e-309 1063.9 1142 54.3
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 7.8e-309 1063.9 1142 53.9
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 1.3e-308 1063.1 1134 54.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 5.1e-308 1061.2 1142 53.8
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 5.6e-307 1057.7 1141 54.3
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 9.5e-307 1057.0 1206 51.8
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.4e-305 1053.1 1206 51.9
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 2.3e-305 1052.4 1142 53.2
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 4.0e-305 1051.6 1144 53.1
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 1.2e-304 1050.0 1157 53.2
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 1.5e-304 1049.7 1141 53.2
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 7.1e-302 1040.8 1142 53.1
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 4.6e-301 1038.1 1047 55.5
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 5.1e-300 1034.6 1142 53.2
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 2.5e-299 1032.3 1141 52.8
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 5.2e-297 1024.6 1139 53.3
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 5.2e-297 1024.6 1141 52.3
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-296 1023.5 1138 52.1
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 1.5e-296 1023.1 1158 51.6
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 1.7e-295 1019.6 1188 51.0
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 5.4e-294 1014.6 1186 50.4
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 2.1e-293 1012.7 1141 52.1
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 4.6e-293 1011.5 1141 51.4
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 4.6e-293 1011.5 1145 52.0
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.3e-292 1010.0 1186 50.3
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 1.7e-292 1009.6 1143 52.3
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 3.9e-292 1008.4 1158 51.0
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 3.9e-292 1008.4 1141 51.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 4.3e-291 1005.0 1145 51.1
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 7.3e-291 1004.2 1158 50.9
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 1.2e-290 1003.4 1158 50.9
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 8.4e-287 990.7 1155 50.0
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 1.7e-284 983.0 1157 50.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 1.7e-284 983.0 1157 50.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 1.7e-284 983.0 1157 50.1
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 2.3e-284 982.6 1157 50.1
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.9e-283 979.5 1144 50.2
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 3.3e-283 978.8 1157 49.9
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 3.3e-283 978.8 1157 49.9
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 3.3e-283 978.8 1172 50.3
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 2.1e-282 976.1 1157 50.0
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 1.1e-281 973.8 1157 49.5
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.8e-281 973.0 1157 49.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 2.6e-280 969.1 1144 49.7
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 3.4e-280 968.8 1157 49.8
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 6.4e-279 964.5 1139 49.5
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 3.2e-278 962.2 1157 49.2
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 1.3e-274 950.3 1084 51.3
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 4.8e-274 948.3 1058 52.6
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 1.3e-266 923.7 1154 46.9
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 2.9e-263 912.5 1135 47.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.2e-262 908.7 1053 53.2
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 5.1e-260 901.7 1138 47.5
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 4.3e-251 872.1 1023 50.1
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.8e-220 770.4 1175 41.8
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 7.5e-219 765.0 1140 40.7
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 5.2e-212 742.3 1132 39.8
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.0e-211 740.3 663 60.2
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 2.7e-200 703.4 1007 44.7
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 2.3e-199 700.3 1136 37.7
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.5e-190 671.0 544 65.8
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.8e-188 664.1 986 44.4
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.4e-180 637.9 728 52.5
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 2.4e-180 637.1 637 55.1
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.3e-175 621.3 692 52.7
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 6.9e-172 609.0 972 42.8
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 3.3e-166 590.1 915 45.2
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.8e-149 533.1 628 51.8
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 3.5e-144 516.9 1142 31.0
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.2e-141 505.8 510 54.9
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 2.3e-135 487.6 974 36.7
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 2.8e-117 427.6 412 56.1
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 4.1e-116 423.7 534 49.3
Haze_23585 Corylus avellana HOM05D002370 ORTHO05D005460 7.0e-108 396.4 253 90.9
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 2.0e-99 368.2 269 67.7
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.3e-93 349.0 282 64.2
Haze_10317 Corylus avellana HOM05D002370 ORTHO05D003878 7.0e-92 343.2 227 81.9
Haze_16272 Corylus avellana HOM05D002370 ORTHO05D005460 1.7e-90 338.6 259 82.2
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 2.6e-86 324.7 636 37.1
Haze_19839 Corylus avellana HOM05D002370 ORTHO05D003878 2.7e-83 314.7 241 78.0
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.3e-82 312.4 1130 26.0
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.0e-82 311.2 373 49.9
Haze_04619 Corylus avellana HOM05D002370 ORTHO05D005460 1.5e-78 298.9 208 85.6
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.7e-77 295.4 169 85.8
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 4.9e-77 293.9 220 74.1
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 4.6e-75 287.3 641 31.7
Haze_21810 Corylus avellana HOM05D002370 ORTHO05D005460 3.0e-74 284.6 193 78.8
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.2e-72 276.9 249 55.0
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.4e-71 275.8 591 32.3
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.2e-70 272.7 245 57.1
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-69 269.2 160 77.5
Haze_10737 Corylus avellana HOM05D002370 ORTHO05D004001 1.3e-69 269.2 189 78.3
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 2.1e-64 251.9 1256 23.9
Haze_25329 Corylus avellana HOM05D002370 ORTHO05D005460 1.9e-57 228.8 162 83.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 6.9e-55 220.3 193 58.0
Haze_10283 Corylus avellana HOM05D002370 ORTHO05D004001 6.5e-37 160.6 110 80.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 4.2e-36 157.9 151 58.3
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 2.7e-35 155.2 98 79.6
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 3.5e-35 154.8 95 80.0
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 5.7e-33 147.5 94 76.6
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 9.6e-33 146.7 168 52.4
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-31 142.9 91 76.9
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 4.5e-30 137.9 108 69.4
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.9e-28 132.5 67 88.1
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.2e-27 129.8 113 61.1
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 1.6e-27 129.4 96 71.9
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.1e-27 129.0 119 62.2
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 3.6e-27 128.3 102 66.7
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 2.3e-26 125.6 103 66.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 5.3e-23 114.4 96 63.5
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.3e-21 109.8 99 59.6
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.2e-20 105.1 113 51.3
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-18 98.6 64 76.6
Haze_16326 Corylus avellana HOM05D002370 ORTHO05D165622 6.7e-18 97.4 80 58.8
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.5e-17 96.3 54 92.6
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 4.4e-17 94.7 57 77.2
Haze_13449 Corylus avellana HOM05D038573 ORTHO05D018934 5.0e-13 81.3 88 54.5
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 1.1e-12 80.1 49 81.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-11 76.3 37 97.3
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 2.1e-11 75.9 62 66.1
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 3.6e-11 75.1 88 50.0
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 3.6e-11 75.1 88 50.0
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-10 72.8 42 76.2
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-10 72.0 42 73.8
Haze_13450 Corylus avellana HOM05D002370 ORTHO05D164056 2.0e-09 69.3 93 48.4
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-09 68.6 46 67.4
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 4.4e-09 68.2 85 50.6
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 4.8e-08 64.7 79 53.2
Haze_13446 Corylus avellana HOM05D038573 ORTHO05D018934 2.0e-06 59.3 68 51.5
Psat0s1135g0040 Pisum sativum HOM05D002140 ORTHO05D019229 3.5e-06 58.5 62 50.0
Haze_21237 Corylus avellana HOM05D000528 ORTHO05D000999 4.5e-06 58.2 79 41.8


User provided reference genes

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