Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_21779 Corylus avellana HOM05D004522 ORTHO05D005887 7.6e-149 530.4 255 100.0
Cfa013296 Carpinus fangiana HOM05D004522 ORTHO05D005887 4.2e-147 524.6 255 98.4
CiPaw.07G210600 Carya illinoinensis HOM05D004522 ORTHO05D005887 8.1e-135 483.8 255 87.8
Dinv37488 Davidia involucrata HOM05D004522 ORTHO05D005887 2.5e-128 462.2 256 84.8
Dinv38803 Davidia involucrata HOM05D004522 ORTHO05D005887 2.5e-128 462.2 254 85.8
QL12p025652 Quercus lobata HOM05D004522 ORTHO05D005887 4.0e-126 454.9 250 85.2
CSS0030659 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 7.6e-125 450.7 257 82.5
Hma1.2p1_0534F.1_g173690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 1.0e-124 450.3 251 84.9
Hma1.2p1_1265F.1_g271353 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 1.0e-124 450.3 251 84.9
Gohir.A06G108300 Gossypium hirsutum HOM05D004522 ORTHO05D005887 2.9e-124 448.7 254 82.7
Hma1.2p1_0495F.1_g165690 Hydrangea macrophylla HOM05D004522 ORTHO05D005887 1.9e-123 446.0 251 83.7
Gorai.010G125500 Gossypium raimondii HOM05D004522 ORTHO05D005887 3.2e-123 445.3 254 81.9
Eucgr.C02139 Eucalyptus grandis HOM05D004522 ORTHO05D005887 4.2e-123 444.9 255 80.8
GSVIVG01035576001 Vitis vinifera HOM05D004522 ORTHO05D005887 2.1e-122 442.6 248 84.3
Thecc.09G000400 Theobroma cacao HOM05D004522 ORTHO05D005887 4.6e-122 441.4 254 81.5
Oeu005158.2 Olea europaea HOM05D004522 ORTHO05D005887 1.8e-121 439.5 257 80.2
CAN.G809.41 Capsicum annuum HOM05D004522 ORTHO05D005887 5.1e-121 438.0 255 78.8
Solyc02g081910.2 Solanum lycopersicum HOM05D004522 ORTHO05D005887 2.5e-120 435.6 255 78.0
Sopen02g026540 Solanum pennellii HOM05D004522 ORTHO05D005887 3.3e-120 435.3 255 77.6
Peaxi162Scf00036g01311 Petunia axillaris HOM05D004522 ORTHO05D005887 9.7e-120 433.7 257 77.8
arahy.Tifrunner.gnm1.ann1.IIX4FM Arachis hypogaea HOM05D004522 ORTHO05D005887 4.8e-119 431.4 256 77.7
Ciclev10007345m.g Citrus clementina HOM05D004522 ORTHO05D005887 6.3e-119 431.0 256 79.7
VMungo0251G2701 Vigna mungo HOM05D004522 ORTHO05D005887 1.1e-118 430.3 258 79.1
Nitab4.5_0000844g0320 Nicotiana tabacum HOM05D004522 ORTHO05D005887 1.4e-118 429.9 255 77.6
Glyma.17G196400 Glycine max HOM05D004522 ORTHO05D005887 2.4e-118 429.1 258 79.1
TWI63G0055 Tripterygium wilfordii HOM05D004522 ORTHO05D005887 2.4e-118 429.1 255 78.4
arahy.Tifrunner.gnm1.ann1.696W46 Arachis hypogaea HOM05D004522 ORTHO05D005887 6.9e-118 427.6 256 77.0
Actinidia21721 Actinidia chinensis HOM05D004522 ORTHO05D005887 9.0e-118 427.2 256 77.3
Manes.03G000450 Manihot esculenta HOM05D004522 ORTHO05D005887 9.0e-118 427.2 256 77.3
Glyma.14G137100 Glycine max HOM05D004522 ORTHO05D005887 1.5e-117 426.4 258 78.3
Phvul.002G181900 Phaseolus vulgaris HOM05D004522 ORTHO05D005887 2.0e-117 426.0 258 78.7
Migut.C00355 Erythranthe guttata HOM05D004522 ORTHO05D005887 1.3e-116 423.3 253 78.7
Potri.006G279700 Populus trichocarpa HOM05D004522 ORTHO05D005887 1.3e-116 423.3 255 78.0
Nn4g23566 Nelumbo nucifera HOM05D004522 ORTHO05D005887 2.2e-116 422.5 256 77.7
Lalb_Chr22g0361201 Lupinus albus HOM05D004522 ORTHO05D005887 5.0e-116 421.4 258 76.4
Prupe.1G457500 Prunus persica HOM05D004522 ORTHO05D005887 5.0e-116 421.4 255 77.3
Atru.chr7.2700 Acer truncatum HOM05D004522 ORTHO05D005887 1.4e-115 419.9 257 76.7
Sed0013871 Sechium edule HOM05D004522 ORTHO05D005887 1.6e-114 416.4 256 76.2
Psat6g033360 Pisum sativum HOM05D004522 ORTHO05D005887 2.7e-114 415.6 255 75.7
SGA_v2.0_scaffold62G21366 Striga asiatica HOM05D004522 ORTHO05D005887 4.6e-114 414.8 257 76.3
DCAR_006332 Daucus carota HOM05D004522 ORTHO05D005887 6.1e-114 414.5 260 75.0
ClCG05G026380 Citrullus lanatus HOM05D004522 ORTHO05D005887 7.9e-114 414.1 253 76.3
ECA234G1339 Erigeron canadensis HOM05D004522 ORTHO05D005887 1.8e-113 412.9 256 75.0
THA.LOC104819919 Tarenaya hassleriana HOM05D004522 ORTHO05D005887 1.8e-113 412.9 267 74.9
MD08G1125900 Malus domestica HOM05D004522 ORTHO05D005887 3.0e-113 412.1 257 75.9
CANSAT25G3238 Cannabis sativa HOM05D004522 ORTHO05D005887 1.5e-112 409.8 257 74.7
RcHm_v2.0_Chr6g0305241 Rosa chinensis HOM05D004522 ORTHO05D005887 2.5e-112 409.1 259 74.9
Rhsim08G0228200 Rhododendron simsii HOM05D004522 ORTHO05D005887 6.3e-111 404.4 256 73.0
HanXRQChr16g0521121 Helianthus annuus HOM05D004522 ORTHO05D005887 2.4e-110 402.5 257 73.5
Aa31LG2G19110 Aethionema arabicum HOM05D004522 ORTHO05D005887 6.9e-110 401.0 251 74.9
EL10Ac2g03676 Beta vulgaris HOM05D004522 ORTHO05D005887 1.2e-109 400.2 253 73.5
FvH4_2g36580 Fragaria vesca HOM05D004522 ORTHO05D005887 1.5e-109 399.8 257 73.5
TPR.G12110 Trifolium pratense HOM05D004522 ORTHO05D005887 1.0e-108 397.1 260 74.2
SalBow1G6309 Salvia bowleyana HOM05D004522 ORTHO05D005887 1.7e-108 396.4 257 73.9
Ca_01520_v3 Cicer arietinum L. HOM05D004522 ORTHO05D005887 2.9e-108 395.6 234 78.2
COL.COLO4_18648 Corchorus olitorius HOM05D004522 ORTHO05D005887 3.8e-108 395.2 253 76.3
vmacro18846 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 6.5e-108 394.4 256 69.9
FAN20G0828 Fragaria x ananassa HOM05D004522 ORTHO05D005887 2.5e-107 392.5 256 72.3
AUR62020658 Chenopodium quinoa HOM05D004522 ORTHO05D005887 3.2e-107 392.1 250 74.0
Aa31LG2G19120 Aethionema arabicum HOM05D004522 ORTHO05D005887 4.2e-107 391.7 251 73.7
MD15G1105700 Malus domestica HOM05D004522 ORTHO05D005887 5.5e-107 391.3 259 72.2
C01p07770 Brassica napus HOM05D004522 ORTHO05D005887 7.2e-107 391.0 262 69.8
C07p58490 Brassica napus HOM05D004522 ORTHO05D005887 1.6e-106 389.8 254 71.7
FAN27G1482 Fragaria x ananassa HOM05D004522 ORTHO05D005887 2.1e-106 389.4 250 71.6
AUR62043895 Chenopodium quinoa HOM05D004522 ORTHO05D005887 2.7e-106 389.0 250 73.2
BcaC09g51903 Brassica carinata HOM05D004522 ORTHO05D005887 3.6e-106 388.7 264 68.9
A03p60590 Brassica napus HOM05D004522 ORTHO05D005887 6.1e-106 387.9 254 70.9
Thhalv10024242m.g Eutrema salsugineum HOM05D004522 ORTHO05D005887 6.1e-106 387.9 264 68.6
TAR629G0385 Trochodendron aralioides HOM05D004522 ORTHO05D005887 6.1e-106 387.9 255 70.6
BolC1t00764H Brassica oleracea HOM05D004522 ORTHO05D005887 1.0e-105 387.1 264 68.6
BolC7t46304H Brassica oleracea HOM05D004522 ORTHO05D005887 1.0e-105 387.1 254 70.9
A01p07030 Brassica napus HOM05D004522 ORTHO05D005887 1.4e-105 386.7 265 68.3
BraA01t00655Z Brassica rapa HOM05D004522 ORTHO05D005887 1.8e-105 386.3 265 68.3
Lj8C583T4 Lonicera japonica HOM05D004522 ORTHO05D005887 3.0e-105 385.6 224 79.9
Sp7g29090 Schrenkiella parvula HOM05D004522 ORTHO05D005887 3.0e-105 385.6 263 68.8
PSO782G1701 Papaver somniferum HOM05D004522 ORTHO05D005887 3.9e-105 385.2 250 72.0
BcaNung01535 Brassica carinata HOM05D004522 ORTHO05D005887 5.1e-105 384.8 254 70.9
CARHR239110 Cardamine hirsuta HOM05D004522 ORTHO05D005887 6.7e-105 384.4 264 68.6
MELO3C003609.2 Cucumis melo HOM05D004522 ORTHO05D005887 1.1e-104 383.6 247 71.7
PSO063G2748 Papaver somniferum HOM05D004522 ORTHO05D005887 1.1e-104 383.6 250 71.6
Carub.0007s0933 Capsella rubella HOM05D004522 ORTHO05D005887 1.5e-104 383.3 252 70.6
AUR62028071 Chenopodium quinoa HOM05D004522 ORTHO05D005887 3.3e-104 382.1 245 73.5
Cc09_g04950 Coffea canephora HOM05D004522 ORTHO05D005887 7.4e-104 380.9 258 70.9
Sed0008341 Sechium edule HOM05D004522 ORTHO05D005887 6.3e-103 377.9 256 70.7
unitig_60.g25825 Utricularia gibba HOM05D004522 ORTHO05D005887 8.2e-103 377.5 257 68.1
Lj5g0011494 Lotus japonicus HOM05D004522 ORTHO05D005887 1.1e-102 377.1 256 68.4
Sabra06G0216700 Salix brachista HOM05D004522 ORTHO05D005887 4.1e-102 375.2 253 72.7
TPR.G39482 Trifolium pratense HOM05D004522 ORTHO05D005887 4.1e-102 375.2 248 71.8
Psat6g033400 Pisum sativum HOM05D004522 ORTHO05D005887 2.6e-101 372.5 249 70.3
AT4G31210 Arabidopsis thaliana HOM05D004522 ORTHO05D005887 3.5e-101 372.1 250 69.6
CANSAT54G0998 Cannabis sativa HOM05D004522 ORTHO05D005887 5.9e-101 371.3 254 71.3
Medtr0245s0010 Medicago truncatula HOM05D004522 ORTHO05D005887 7.7e-101 370.9 258 69.4
RhsimUnG0118700 Rhododendron simsii HOM05D004522 ORTHO05D005887 7.7e-101 370.9 244 70.5
Ah.14g088390 Amaranthus hybridus HOM05D004522 ORTHO05D005887 1.0e-100 370.5 250 68.4
AL7G20870 Arabidopsis lyrata HOM05D004522 ORTHO05D005887 1.0e-100 370.5 250 68.8
Aqoxy3G03771 Aquilegia oxysepala HOM05D004522 ORTHO05D005887 2.2e-100 369.4 256 68.0
Medtr1g009315 Medicago truncatula HOM05D004522 ORTHO05D005887 1.1e-96 357.1 258 67.4
Hund03258 Selenicereus undatus HOM05D004522 ORTHO05D005887 3.3e-96 355.5 254 64.6
CsaV3_3G047220 Cucumis sativus L. HOM05D004522 ORTHO05D005887 9.7e-96 354.0 253 64.8
AUR62044451 Chenopodium quinoa HOM05D004522 ORTHO05D005887 4.1e-94 348.6 250 67.6
ATR0691G178 Amborella trichopoda HOM05D004522 ORTHO05D005887 7.0e-94 347.8 255 61.6
Migut.E00600 Erythranthe guttata HOM05D004522 ORTHO05D005887 3.5e-93 345.5 245 67.8
Actinidia32105 Actinidia chinensis HOM05D004522 ORTHO05D005887 1.0e-92 344.0 255 66.3
BraA03t15100Z Brassica rapa HOM05D004522 ORTHO05D005887 1.0e-92 344.0 215 73.5
vmacro20064 Vaccinium macrocarpon HOM05D004522 ORTHO05D005887 1.7e-92 343.2 243 66.7
Lsat_1_v5_gn_4_39420 Lactuca sativa HOM05D004522 ORTHO05D005887 8.5e-92 340.9 253 66.4
Medtr1g009570 Medicago truncatula HOM05D004522 ORTHO05D005887 1.1e-91 340.5 257 64.2
CDE02G2996 Ceratophyllum demersum HOM05D004522 ORTHO05D005887 4.0e-89 332.0 252 61.1
Zm00001eb380580 Zea mays HOM05D004522 ORTHO05D005887 3.7e-87 325.5 253 60.5
Cpa.g.sc246.4 Carica papaya HOM05D004522 ORTHO05D005887 4.8e-87 325.1 257 64.6
Zm00001eb280820 Zea mays HOM05D004522 ORTHO05D005887 3.8e-84 315.5 253 58.9
Sc10g0004210 Simmondsia chinensis HOM05D004522 ORTHO05D005887 8.5e-84 314.3 200 73.5
PSO478G3803 Papaver somniferum HOM05D004522 ORTHO05D005887 3.2e-83 312.4 250 58.4
Gohir.D06G110400 Gossypium hirsutum HOM05D004522 ORTHO05D005887 1.8e-78 296.6 161 85.1
Medtr0229s0020 Medicago truncatula HOM05D004522 ORTHO05D005887 1.2e-77 293.9 207 70.0
HPP92_015554 Vanilla planifolia HOM05D004522 ORTHO05D005887 2.2e-71 273.1 283 48.8
Nitab4.5_0011308g0040 Nicotiana tabacum HOM05D004522 ORTHO05D005887 6.8e-65 251.5 164 72.0
MBI16_g42310_MAGBIO Magnolia biondii HOM05D004522 ORTHO05D005887 5.0e-60 235.3 216 55.6
SEGI_38297 Sequoiadendron giganteum HOM05D004522 ORTHO05D005887 1.6e-58 230.3 213 52.1
Pp3c23_11430 Physcomitrium patens HOM05D004522 ORTHO05D005887 2.4e-54 216.5 261 39.1
PGSC0003DMG400012781 Solanum tuberosum HOM05D004522 ORTHO05D005887 8.6e-52 208.0 155 65.2
Pp3c24_9990 Physcomitrium patens HOM05D004522 ORTHO05D005887 1.6e-50 203.8 260 39.6
Mapoly0025s0095 Marchantia polymorpha HOM05D004522 ORTHO05D005887 1.2e-48 197.6 247 39.3
Nitab4.5_0011308g0020 Nicotiana tabacum HOM05D004522 ORTHO05D005887 9.2e-46 188.0 94 87.2
AUR62013317 Chenopodium quinoa HOM05D004522 ORTHO05D008760 3.3e-43 179.5 94 83.0
AagrBONN_evm.TU.Sc2ySwM_228.692 Anthoceros agrestis HOM05D004522 ORTHO05D005887 1.2e-42 177.6 244 40.2
AUR62038716 Chenopodium quinoa HOM05D004522 ORTHO05D005887 3.1e-41 172.9 120 69.2
SMO304G0055 Selaginella moellendorffii HOM05D004522 ORTHO05D005887 2.2e-39 166.8 241 37.8
CBR_g22953 Chara braunii HOM05D004522 ORTHO05D005887 7.9e-29 131.7 299 28.8
MCO16G139 Micromonas commoda HOM05D004522 ORTHO05D005887 2.9e-23 113.2 262 29.0
CSS0024449 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 6.0e-21 105.5 75 72.0
CSS0018701 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 2.5e-19 100.1 73 72.6
CSS0037923 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 4.5e-16 89.4 71 67.6
CSS0004825 Camellia sinensis var. sinensis HOM05D004522 ORTHO05D005887 2.9e-15 86.7 77 62.3
Cre10.g442850 Chlamydomonas reinhardtii HOM05D004522 ORTHO05D005887 2.5e-14 83.6 259 27.8
Os06g0281400 Oryza sativa ssp. japonica HOM05D004522 ORTHO05D005887 9.0e-09 65.1 41 65.9
SMO014G0004 Selaginella moellendorffii HOM05D004522 ORTHO05D005887 2.9e-07 60.1 76 43.4


User provided reference genes

Program Settings