Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 2302.7 1137 100.0
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1941.0 1189 84.9
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1753.8 1189 76.8
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1731.5 1189 75.6
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1605.5 1193 70.2
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1594.7 1189 71.0
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1569.3 1189 69.3
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1556.6 1178 69.8
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1553.1 1195 68.7
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1548.1 1196 68.4
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1541.2 1193 67.4
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1535.4 1191 68.1
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1534.2 1191 67.9
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1533.1 1189 67.9
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1531.2 1193 67.5
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1528.8 1193 67.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1526.5 1188 69.0
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1525.8 1193 67.1
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1516.1 1190 67.7
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1515.7 1193 67.3
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1497.6 1194 66.9
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1496.5 1200 66.2
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1491.5 1190 67.2
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1481.5 1188 65.9
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1468.8 1186 66.9
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1461.8 1194 65.1
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1461.4 1190 65.7
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1459.5 1207 63.9
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1457.6 1185 65.4
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1455.3 1187 65.0
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1454.9 1190 65.8
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1453.7 1185 64.9
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1453.3 1243 63.9
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1453.0 1185 65.1
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1441.4 1195 64.0
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1437.2 1193 63.8
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1434.5 1191 63.5
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1432.2 1104 68.5
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1430.6 1190 64.0
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1427.9 1191 64.3
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1427.9 1185 63.3
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1427.5 1188 63.5
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1421.8 1170 65.1
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1415.2 1193 63.5
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1411.4 1191 63.7
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1411.0 1191 63.4
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1409.8 1227 61.4
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1405.2 1191 63.6
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1404.0 1191 63.4
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1401.7 1191 63.4
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1400.6 1204 63.0
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1399.8 1188 63.6
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1397.5 1167 64.1
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1394.8 1185 61.9
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1393.6 1154 62.9
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1393.3 1203 62.7
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1388.2 1220 61.0
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1387.9 1191 62.9
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1385.5 1179 61.9
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1381.3 1201 62.4
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1370.5 1126 64.3
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1368.2 1186 63.8
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1358.6 1151 63.6
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1358.6 1186 61.0
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1357.8 1268 58.0
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1333.2 1197 59.9
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1329.7 1197 60.6
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1326.2 933 71.9
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1323.9 1182 60.7
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1323.9 1200 60.2
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1315.1 1193 60.1
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1313.9 1194 60.8
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1313.9 1195 59.7
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1308.1 1312 55.4
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1294.3 1191 60.2
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1289.2 934 71.1
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1284.6 1190 59.7
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1279.2 1207 58.7
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1276.9 934 70.1
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1257.3 1061 64.7
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1253.0 1062 64.1
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1250.0 933 68.7
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1237.6 909 69.5
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1228.4 1288 54.5
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1223.0 884 71.5
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1214.9 922 67.8
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1211.4 1191 55.1
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1205.7 998 63.9
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1192.9 933 66.5
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1189.9 1187 54.9
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1188.3 937 66.4
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1183.7 1134 58.0
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1156.0 892 65.8
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1152.9 1195 55.0
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1127.5 1175 55.3
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1084.7 923 62.5
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 2.6e-302 1042.3 1166 51.5
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.1e-300 1036.9 729 72.7
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 3.3e-284 982.2 943 56.4
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.7e-248 863.6 673 65.2
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 5.8e-241 838.6 666 65.5
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.8e-240 835.9 764 59.4
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 1.2e-222 777.7 1211 41.0
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 1.8e-221 773.9 1211 39.9
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 5.9e-209 732.3 1070 41.0
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 4.7e-190 669.5 562 64.9
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 5.2e-189 666.0 549 65.4
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.4e-173 614.8 1038 38.3
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 3.2e-154 550.4 501 60.7
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 8.9e-149 532.3 439 65.1
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.2e-137 495.4 469 60.3
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 1.9e-119 434.9 351 64.4
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 5.6e-111 406.8 1167 29.6
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 9.6e-111 406.0 389 54.0
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 6.7e-88 330.1 225 72.9
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 2.4e-77 295.0 208 72.1
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 1.2e-73 282.7 208 68.8
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-72 278.9 188 75.0
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 2.0e-63 248.8 210 62.4
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.7e-63 247.3 235 59.6
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 7.0e-61 240.4 130 84.6
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.5e-58 231.9 171 71.9
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 4.1e-53 214.5 209 59.3
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 9.1e-53 213.4 174 64.4
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.7e-52 211.8 191 63.9
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 2.9e-51 208.4 194 59.3
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 3.0e-48 198.4 154 67.5
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 2.7e-44 185.3 177 60.5
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 6.6e-43 180.6 194 54.6
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 6.6e-43 180.6 180 56.1
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 8.3e-38 163.7 201 48.3
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 7.0e-37 160.6 97 77.3
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.6e-33 149.4 178 50.6
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 3.6e-33 148.3 108 64.8
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.2e-30 139.0 182 44.5
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 3.2e-29 135.2 143 53.1
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.6e-28 131.3 92 70.7
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 3.4e-23 115.2 121 54.5
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.7e-22 112.8 90 64.4
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 8.4e-22 110.5 139 45.3
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.1e-21 110.2 92 54.3
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 4.1e-21 108.2 95 64.2
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.6e-20 106.3 88 54.5
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 1.9e-18 99.4 93 51.6
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 6.8e-16 90.9 105 47.6
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 5.8e-15 87.8 72 63.9
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 1.3e-14 86.7 100 52.0
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.7e-14 86.3 66 63.6
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 2.2e-14 85.9 130 40.8
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 8.4e-14 84.0 67 59.7
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.1e-13 83.6 76 59.2
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 7.1e-13 80.9 52 75.0
Cre10.g425675 Chlamydomonas reinhardtii HOM05D001849 ORTHO05D004689 1.2e-12 80.1 249 28.5
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.6e-12 78.2 68 55.9
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.0e-12 77.8 90 41.1
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 1.6e-09 69.7 82 53.7
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 6.2e-09 67.8 45 77.8
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 6.9e-08 64.3 294 25.9
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 1.5e-07 63.2 43 76.7
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 1.5e-07 63.2 43 76.7
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 2.6e-07 62.4 278 27.0
SEGI_26020 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.4e-07 61.6 134 35.8
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 2.2e-06 59.3 92 43.5


User provided reference genes

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