Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 0.0e+00 2041.9 1049 100.0
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 0.0e+00 1808.1 1049 90.0
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1448.0 1051 75.0
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 0.0e+00 1443.3 1051 74.6
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 0.0e+00 1250.7 1011 68.5
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 0.0e+00 1134.8 1046 60.4
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 0.0e+00 1122.1 1040 60.8
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1112.1 1007 61.8
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 0.0e+00 1094.0 1055 59.2
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 0.0e+00 1075.1 1063 57.7
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 0.0e+00 1075.1 958 61.3
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 2.1e-309 1065.8 1064 59.3
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 3.6e-306 1055.0 1024 59.1
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 6.6e-300 1034.2 1058 56.9
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 5.6e-299 1031.2 1024 57.9
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 9.0e-297 1023.8 1026 57.6
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 4.5e-296 1021.5 1044 55.8
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 1.6e-293 1013.1 1071 55.4
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 7.9e-293 1010.7 1058 54.5
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.3e-292 1009.2 1037 56.7
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 6.7e-292 1007.7 1056 56.2
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.5e-291 1005.7 935 59.5
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 7.4e-291 1004.2 920 60.0
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 2.0e-288 996.1 1039 55.1
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 8.4e-287 990.7 1063 55.2
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 3.2e-286 988.8 1051 54.8
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 1.0e-284 983.8 1043 56.1
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 5.1e-284 981.5 1047 54.1
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 3.3e-283 978.8 1047 54.3
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.0e-279 967.2 1055 54.3
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.7e-279 966.5 1041 53.3
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.9e-278 963.0 1101 53.4
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 1.9e-278 963.0 1056 52.8
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 7.2e-278 961.1 1017 54.6
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 2.7e-277 959.1 1101 53.2
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 2.7e-277 959.1 1053 53.0
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 4.6e-277 958.4 1066 54.0
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 6.1e-277 958.0 1065 53.2
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 4.3e-275 951.8 1041 53.0
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 9.1e-273 944.1 971 55.2
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.5e-272 943.3 1057 53.5
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 4.5e-272 941.8 1058 52.7
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.3e-271 940.3 1057 51.8
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 2.1e-269 932.9 1020 52.5
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 4.6e-269 931.8 1053 53.1
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.1e-267 927.2 1049 52.0
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 1.8e-265 919.8 1059 51.7
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 4.1e-265 918.7 1059 51.4
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 1.9e-262 909.8 1057 50.6
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.6e-261 906.7 1057 50.7
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 4.7e-261 905.2 1026 52.0
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 7.9e-261 904.4 1064 50.4
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.3e-258 897.1 918 55.2
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 2.2e-258 896.3 1059 51.7
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 4.5e-256 888.6 1069 51.2
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 3.8e-255 885.6 1053 49.2
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.1e-254 884.0 1026 50.9
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 9.4e-254 880.9 760 62.1
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 2.0e-248 863.2 935 52.4
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 3.5e-248 862.4 1057 49.5
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 5.9e-248 861.7 1021 49.8
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.2e-246 855.9 805 59.3
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 4.2e-246 855.5 1024 50.3
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 7.2e-246 854.7 938 52.0
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 1.6e-245 853.6 932 52.4
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 2.1e-245 853.2 965 51.5
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 8.0e-245 851.3 1030 48.9
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 2.3e-244 849.7 1054 48.6
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 5.5e-238 828.6 1047 48.3
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 2.1e-229 800.0 1076 46.7
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 2.4e-225 786.6 1037 47.4
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 5.4e-225 785.4 982 48.1
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 4.6e-224 782.3 970 49.7
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.0e-223 781.2 957 48.4
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 3.0e-223 779.6 1076 44.6
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 2.1e-221 773.5 1031 46.5
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.1e-220 771.2 1035 47.5
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.2e-219 767.7 989 48.0
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 4.1e-217 759.2 1028 45.7
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 4.1e-217 759.2 1031 47.2
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 1.6e-216 757.3 932 49.0
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.0e-216 756.9 979 46.7
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 2.5e-214 750.0 1040 45.0
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 3.6e-213 746.1 798 53.5
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 6.8e-212 741.9 985 45.9
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.2e-211 741.1 1050 44.5
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 1.2e-211 741.1 974 45.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 7.5e-211 738.4 934 48.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.7e-210 737.3 974 45.5
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 4.1e-209 732.6 700 58.3
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 1.1e-206 724.5 941 46.9
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 1.1e-206 724.5 767 55.3
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 2.8e-205 719.9 1064 44.1
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 4.9e-202 709.1 1074 42.5
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 2.4e-201 706.8 948 44.4
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.2e-195 688.0 1018 42.6
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.7e-194 684.1 627 59.3
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 2.8e-189 666.8 685 54.7
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 1.3e-186 657.9 930 45.3
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 2.4e-172 610.5 737 50.1
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 4.9e-170 602.8 1045 39.8
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.8e-149 533.9 479 60.8
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 4.2e-145 520.0 1109 35.3
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.6e-136 491.5 1042 35.5
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 2.7e-136 490.7 1179 34.4
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 9.7e-134 482.3 866 38.5
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.7e-133 481.5 1051 34.8
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 3.7e-109 400.6 463 51.0
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 4.9e-109 400.2 1060 31.5
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.9e-69 268.1 1012 27.6
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.9e-57 228.8 477 32.9
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 4.3e-49 201.1 299 43.1
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 5.3e-47 194.1 420 32.1
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 3.4e-38 164.9 251 35.5
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 6.3e-32 144.1 138 56.5
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 3.2e-28 131.7 314 29.9
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 8.8e-26 123.6 190 45.8
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.4e-23 116.3 250 30.0
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 1.1e-20 106.7 198 42.9
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.2e-17 96.7 194 27.8
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 8.3e-16 90.5 85 57.6
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 3.5e-14 85.1 108 45.4


User provided reference genes

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