Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 1.9e-262 908.7 477 100.0
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 2.6e-187 659.1 477 73.2
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.0e-162 577.4 477 64.6
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 3.7e-157 558.9 476 64.9
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.9e-145 520.0 477 59.5
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 2.5e-145 519.6 477 58.9
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 1.1e-143 514.2 476 59.5
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 2.2e-141 506.5 477 57.7
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 2.9e-141 506.1 481 58.8
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.4e-140 503.8 477 57.9
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 3.2e-140 502.7 430 62.3
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 7.1e-140 501.5 477 57.4
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 9.2e-140 501.1 477 59.7
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 1.6e-139 500.4 478 58.2
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 5.1e-138 495.4 475 57.5
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 6.6e-138 495.0 477 57.0
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 6.6e-138 495.0 481 58.6
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 8.1e-136 488.0 513 53.6
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 2.6e-134 483.0 478 55.0
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 3.4e-134 482.6 469 57.8
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 4.4e-134 482.3 469 57.4
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 3.8e-133 479.2 479 59.3
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 1.1e-132 477.6 480 52.9
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.4e-132 476.5 469 57.1
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 3.2e-132 476.1 479 55.7
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.4e-132 475.3 484 55.0
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 7.1e-132 474.9 430 58.8
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 1.2e-131 474.2 480 53.3
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.6e-131 473.8 477 54.9
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 3.5e-131 472.6 480 54.2
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 7.8e-131 471.5 480 53.1
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 1.0e-130 471.1 481 53.2
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 2.3e-130 469.9 482 53.3
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 3.0e-130 469.5 493 54.0
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 3.9e-130 469.2 476 54.6
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 5.1e-130 468.8 480 52.7
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 1.5e-129 467.2 461 55.3
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 3.3e-129 466.1 464 55.2
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 3.3e-129 466.1 475 55.8
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 4.3e-129 465.7 478 55.4
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 9.6e-129 464.5 521 53.4
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 6.2e-128 461.8 424 57.1
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 8.1e-128 461.5 477 54.9
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 8.1e-128 461.5 474 55.5
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 3.1e-127 459.5 465 56.3
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 8.9e-127 458.0 501 52.7
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 3.4e-126 456.1 447 56.4
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 7.6e-126 454.9 494 53.6
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 1.3e-125 454.1 474 52.7
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 2.2e-125 453.4 477 52.4
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 2.2e-125 453.4 484 53.7
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 3.8e-125 452.6 460 54.1
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 6.4e-125 451.8 473 56.2
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 8.4e-125 451.4 480 52.9
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 8.4e-125 451.4 480 51.5
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.6e-123 447.2 477 53.0
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 2.1e-123 446.8 480 52.5
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 3.5e-123 446.0 479 54.7
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 3.0e-122 443.0 475 52.2
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 3.9e-122 442.6 476 52.1
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 3.9e-122 442.6 480 51.9
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 5.1e-122 442.2 500 52.2
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 6.6e-122 441.8 478 51.9
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 8.7e-122 441.4 476 55.7
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 2.5e-121 439.9 476 51.9
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 2.5e-121 439.9 480 51.9
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 5.6e-121 438.7 481 51.4
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 4.0e-119 432.6 508 50.4
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 9.0e-119 431.4 510 49.0
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 2.0e-118 430.3 428 54.4
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 4.5e-118 429.1 428 54.2
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 9.9e-118 427.9 428 55.6
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 2.2e-117 426.8 470 52.3
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 2.9e-117 426.4 465 51.6
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 4.9e-117 425.6 476 50.2
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 8.4e-117 424.9 465 51.2
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 2.4e-116 423.3 428 53.3
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 3.2e-116 422.9 465 52.3
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 4.6e-115 419.1 466 51.1
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 4.6e-115 419.1 482 53.7
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 4.6e-115 419.1 425 53.9
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 7.9e-115 418.3 470 50.6
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 5.1e-114 415.6 470 52.1
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 6.7e-114 415.2 470 53.4
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 8.7e-114 414.8 464 50.9
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 2.8e-112 409.8 464 51.3
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 8.1e-112 408.3 473 51.4
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 1.8e-111 407.1 471 49.0
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 1.8e-111 407.1 471 49.0
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 4.0e-111 406.0 476 50.6
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 1.7e-109 400.6 427 52.7
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.3e-106 391.0 432 50.2
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 3.0e-106 389.8 437 50.6
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 9.3e-100 368.2 424 50.7
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 6.7e-98 362.1 426 50.5
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 3.8e-93 346.3 425 45.4
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 3.6e-91 339.7 477 46.3
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.3e-88 331.3 429 44.5
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 1.6e-83 314.3 359 51.0
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.3e-80 304.7 386 46.1
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.3e-77 294.7 376 46.0
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 6.5e-77 292.4 421 40.9
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.9e-68 264.2 285 49.8
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 2.5e-68 263.8 556 35.1
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 5.2e-66 256.1 197 65.5
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 7.0e-63 245.7 321 44.2
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 3.5e-54 216.9 244 49.2
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 1.9e-52 211.1 228 52.2
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 3.8e-45 186.8 139 74.1
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 5.0e-45 186.4 273 44.0
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 3.3e-44 183.7 486 30.5
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 4.9e-32 143.3 137 56.9
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 2.5e-20 104.4 179 37.4
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 2.5e-12 77.8 226 26.5
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 9.6e-12 75.9 224 26.8
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.6e-11 75.1 226 28.8
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 6.2e-11 73.2 51 68.6
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 3.4e-09 67.4 426 21.4
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 9.9e-09 65.9 234 24.4
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 1.9e-07 61.6 96 29.2
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 3.2e-07 60.8 74 40.5
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 4.2e-07 60.5 224 24.6
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 4.2e-07 60.5 224 24.6
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 4.2e-07 60.5 224 23.7
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 9.3e-07 59.3 224 25.0
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 1.6e-06 58.5 96 30.2
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 2.1e-06 58.2 96 31.2
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 2.7e-06 57.8 72 34.7
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 2.7e-06 57.8 96 28.1
MELO3C021228.2 Cucumis melo HOM05D006708 ORTHO05D008321 3.5e-06 57.4 96 30.2
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 3.5e-06 57.4 224 23.2
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 3.5e-06 57.4 224 22.8
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 3.5e-06 57.4 225 24.0
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 4.6e-06 57.0 97 30.9
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 4.6e-06 57.0 75 36.0
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 4.6e-06 57.0 96 29.2
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 4.6e-06 57.0 224 27.7
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 6.0e-06 56.6 224 23.7
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 7.8e-06 56.2 225 24.0
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 7.8e-06 56.2 72 34.7


User provided reference genes

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