Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1765.7 868 100.0
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1530.0 832 91.6
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1370.9 835 82.5
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1343.2 832 80.2
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1342.0 828 80.4
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1334.3 832 80.2
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1333.9 826 80.3
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1332.0 832 79.3
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1331.6 833 79.4
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 832 79.2
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1327.8 828 79.8
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1326.6 828 79.8
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1325.1 832 79.1
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1318.9 839 78.7
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1318.9 832 79.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1318.1 836 78.5
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1314.7 829 78.3
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1314.3 828 79.3
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1309.7 828 78.4
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1309.7 837 78.3
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1309.3 832 79.4
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1308.5 832 79.4
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1308.1 832 79.6
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1307.7 836 78.0
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1307.0 832 77.5
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1306.2 831 78.1
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1304.7 832 78.2
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1303.5 828 78.7
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1302.3 830 78.0
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1301.6 832 78.0
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1299.3 828 77.4
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1297.7 832 76.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1296.6 832 78.7
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1294.3 828 77.8
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1286.9 832 78.4
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 828 77.2
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1286.6 832 76.8
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1285.0 830 76.9
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 837 75.7
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1280.8 832 76.8
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1280.4 830 76.4
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 831 76.3
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1279.6 834 76.1
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 828 76.9
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1266.9 828 76.6
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1266.5 831 75.9
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1254.2 911 70.1
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 832 75.5
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 828 76.2
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1251.5 1013 66.4
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 832 74.0
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1243.0 832 74.2
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1239.6 838 73.3
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1233.4 828 73.9
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1230.7 829 75.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1228.8 833 73.2
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 796 75.9
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1219.9 829 72.7
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1217.2 818 73.6
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1216.1 828 72.5
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1213.7 829 72.6
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1213.4 828 72.1
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1212.2 828 73.3
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 829 71.9
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1211.1 829 72.7
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1210.3 828 71.7
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1206.4 828 71.9
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1206.0 829 71.9
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1203.7 828 71.5
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1202.6 831 72.1
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 829 71.5
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 828 72.3
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1198.0 828 71.3
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1198.0 828 71.3
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1197.6 829 72.1
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1196.4 828 71.3
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1196.4 828 71.5
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1194.9 829 71.3
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1194.9 828 72.1
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1194.1 846 71.0
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1192.6 830 71.6
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1189.9 828 71.7
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1188.3 878 68.2
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 828 71.5
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 828 71.3
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 828 71.4
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1180.2 832 71.0
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1180.2 842 70.3
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1174.5 833 71.1
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1167.5 828 69.9
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1163.3 884 66.4
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1162.1 835 69.5
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1161.7 832 70.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1161.0 832 71.3
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1141.3 832 72.0
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1135.2 829 69.6
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1131.3 827 68.0
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1127.1 829 68.5
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1125.9 828 68.2
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1122.5 828 69.9
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1120.5 934 63.6
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1119.4 825 66.9
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1118.2 830 68.4
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1117.8 787 71.3
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1114.4 828 67.3
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1113.6 993 61.0
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1109.7 832 65.9
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 5.9e-312 1073.5 828 66.2
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 3.0e-298 1028.5 837 65.9
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 1.1e-295 1020.0 830 60.8
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.1e-295 1018.5 834 61.3
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 5.3e-295 1017.7 830 64.0
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 8.5e-293 1010.4 650 77.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 7.0e-271 937.6 824 56.4
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 3.6e-259 898.7 825 57.5
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 7.1e-247 857.8 829 57.5
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 2.2e-187 660.2 426 76.1
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.0e-176 624.8 872 41.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 3.7e-147 526.6 853 37.5
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 5.0e-136 489.6 830 39.0
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 6.6e-128 462.6 865 35.4
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 8.6e-128 462.2 967 31.6
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 5.4e-122 443.0 417 54.9
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.6e-118 430.3 342 63.5
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 3.1e-117 427.2 344 66.9
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.3e-112 411.8 246 79.3
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 3.3e-79 300.8 236 68.6
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.0e-64 252.7 310 47.4
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 8.0e-57 226.5 154 76.0
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.3e-56 224.9 165 69.1
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.9e-51 208.0 142 76.8
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 4.4e-47 194.1 196 59.7
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 9.8e-39 166.4 90 83.3
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.4e-37 161.8 269 41.3
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 3.1e-37 161.4 125 61.6
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.5e-36 157.5 113 68.1
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.9e-36 157.1 98 80.6
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.5e-31 142.5 123 65.9
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 4.9e-30 137.5 181 46.4
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.6e-27 127.1 80 78.8
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 3.6e-25 121.3 117 53.8
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 1.1e-21 109.8 126 50.8
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.9e-21 109.0 69 78.3
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 2.7e-20 105.1 72 70.8
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.6e-20 104.4 235 33.6
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 8.6e-19 100.1 59 79.7
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 4.3e-18 97.8 68 70.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.2e-17 96.3 50 86.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.1e-17 95.5 74 64.9
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 6.2e-17 94.0 166 42.8
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.5e-15 89.4 45 84.4
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.2e-14 85.5 151 39.1
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 5.4e-13 80.9 57 75.4
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 6.6e-11 73.9 60 63.3
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 5.6e-10 70.9 129 37.2
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 1.6e-09 69.3 57 68.4
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 2.1e-09 68.9 75 56.0
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.8e-09 68.6 57 68.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.8e-09 68.6 57 68.4
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 6.2e-09 67.4 87 39.1
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.1e-08 66.6 54 70.4
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 1.1e-08 66.6 57 64.9
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.1e-08 65.1 54 68.5
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.1e-08 65.1 54 68.5
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.1e-08 65.1 54 68.5
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.1e-08 65.1 54 68.5
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.0e-07 62.4 34 91.2
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 4.9e-06 57.8 310 23.9
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 6.4e-06 57.4 43 67.4


User provided reference genes

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