Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 0.0e+00 1366.7 685 100.0
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 0.0e+00 1181.0 697 87.4
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.2e-297 1026.2 638 83.4
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 6.1e-294 1013.8 693 76.5
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 3.4e-289 998.0 704 73.9
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 7.2e-271 937.2 706 69.3
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 4.2e-263 911.4 707 67.6
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.5e-255 886.3 715 65.5
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 1.5e-252 876.3 708 63.7
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.7e-251 872.8 703 65.0
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 2.4e-250 869.0 709 64.0
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 9.2e-250 867.1 677 65.7
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 2.3e-248 862.4 704 64.1
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 3.3e-247 858.6 712 63.6
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 4.7e-246 854.7 694 63.3
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 6.2e-246 854.4 679 65.1
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 1.1e-245 853.6 699 64.1
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 4.0e-245 851.7 685 64.4
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 3.4e-244 848.6 685 64.2
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 3.4e-244 848.6 749 60.1
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 7.5e-244 847.4 688 64.5
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.2e-243 845.9 706 63.6
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 6.4e-243 844.3 675 64.9
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 3.2e-242 842.0 699 63.5
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 4.1e-242 841.6 683 64.1
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 2.7e-241 839.0 708 63.6
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 1.5e-239 833.2 675 64.1
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 4.3e-239 831.6 701 63.2
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.8e-238 828.9 706 62.6
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.5e-236 823.2 734 59.4
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.9e-235 818.9 710 61.4
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 7.8e-233 810.8 732 60.1
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 3.3e-231 805.4 699 58.9
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.0e-229 798.5 753 57.9
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 6.8e-229 797.7 697 60.5
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 4.4e-228 795.0 704 60.9
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 2.2e-227 792.7 642 64.2
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.9e-226 789.6 728 59.5
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 2.4e-226 789.3 698 58.6
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 3.0e-224 782.3 722 57.2
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 3.9e-224 781.9 703 59.3
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.1e-223 780.4 715 59.2
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 3.2e-218 762.3 709 57.7
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 5.4e-218 761.5 632 63.6
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 9.3e-218 760.8 716 57.1
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 2.7e-217 759.2 720 56.7
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 8.1e-214 747.7 870 50.3
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 5.3e-213 745.0 781 53.1
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 7.6e-212 741.1 688 58.7
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.6e-209 733.4 686 56.9
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 2.3e-208 729.6 711 57.0
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 3.7e-206 722.2 710 55.6
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.2e-204 717.2 706 55.5
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.4e-204 715.7 707 55.2
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 5.8e-204 714.9 706 55.1
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 5.5e-202 708.4 707 55.4
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 1.6e-201 706.8 716 54.2
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 1.6e-201 706.8 667 56.2
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 3.0e-200 702.6 701 54.1
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 2.4e-197 693.0 697 54.2
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 3.4e-196 689.1 705 53.9
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 5.8e-196 688.3 701 54.2
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 1.0e-195 687.6 701 53.8
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.2e-193 680.6 697 53.8
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.2e-193 680.6 697 53.8
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.2e-193 680.6 697 53.8
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.3e-192 676.4 629 56.8
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 5.1e-192 675.2 694 53.3
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 2.0e-188 663.3 685 55.3
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.2e-186 654.8 683 51.8
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 8.8e-184 647.9 615 56.9
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 2.5e-183 646.4 675 54.1
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 5.7e-183 645.2 685 51.4
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 2.8e-182 642.9 554 62.3
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 4.8e-182 642.1 643 55.5
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.2e-180 637.5 612 57.7
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.1e-175 620.9 679 51.5
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 4.4e-175 619.0 619 54.4
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 1.4e-173 614.0 685 50.7
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 1.1e-170 604.4 685 49.6
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.4e-168 597.4 694 49.9
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.8e-166 589.7 507 60.7
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.2e-164 584.3 516 59.5
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 4.5e-164 582.4 592 55.2
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.0e-163 581.3 686 49.4
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 4.2e-162 575.9 674 49.3
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.7e-161 573.2 656 48.5
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 4.0e-160 569.3 688 46.9
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 8.8e-160 568.2 681 48.2
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 9.7e-159 564.7 675 47.9
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 3.6e-153 546.2 697 45.9
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 2.2e-150 537.0 608 50.8
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.8e-142 510.0 546 52.4
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 9.8e-135 485.0 481 54.9
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 6.6e-123 445.7 700 39.1
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.5e-122 444.5 671 42.5
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.5e-122 443.7 769 38.6
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 5.6e-122 442.6 681 40.2
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 1.1e-114 418.3 687 36.7
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.5e-111 407.9 567 43.2
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 2.0e-111 407.5 695 37.6
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 2.0e-103 380.9 481 45.3
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 6.4e-94 349.4 574 40.1
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 1.6e-92 344.7 224 78.1
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.1e-90 338.6 436 47.0
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 5.6e-90 336.3 224 73.7
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.1e-85 322.0 310 56.5
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.4e-85 321.6 531 39.7
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.6e-81 308.1 436 43.8
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.7e-78 298.1 285 55.8
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.8e-72 278.1 947 27.1
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 8.5e-70 269.2 347 47.3
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.4e-64 251.9 171 71.3
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 7.9e-60 236.1 167 70.7
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 1.1e-58 232.3 164 69.5
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 5.7e-58 229.9 208 59.1
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.4e-56 224.6 146 77.4
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 7.7e-55 219.5 135 80.7
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.3e-54 218.8 145 75.9
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 9.4e-53 212.6 174 58.6
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 3.0e-51 207.6 166 66.3
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 5.3e-48 196.8 385 38.7
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 4.5e-47 193.7 176 59.7
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 3.6e-44 184.1 165 57.6
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.1e-40 172.6 143 60.8
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 9.1e-40 169.5 135 63.0
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 8.5e-38 162.9 146 58.9
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.5e-37 161.4 171 50.9
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.2e-36 159.1 261 39.8
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 6.1e-36 156.8 124 62.1
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 3.4e-34 151.0 193 45.6
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.7e-30 138.7 346 31.8
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 2.3e-30 138.3 100 65.0
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.9e-29 135.2 259 33.6
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 1.5e-26 125.6 146 49.3
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 1.8e-24 118.6 143 46.9
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.8e-24 118.6 140 48.6
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 9.2e-24 116.3 252 31.0
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.5e-21 109.0 91 63.7
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 8.9e-19 99.8 177 35.6
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.7e-17 95.5 55 80.0
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 1.1e-16 92.8 55 74.5
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 3.2e-16 91.3 53 81.1
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 4.6e-15 87.4 82 53.7
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 6.2e-12 77.0 61 57.4
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 1.1e-11 76.3 107 43.9
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-11 75.9 107 43.9
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.0e-06 59.7 76 39.5


User provided reference genes

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