Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.9e-141 504.2 259 100.0
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.0e-137 493.4 261 97.7
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.2e-136 490.0 269 94.8
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 9.5e-131 470.3 269 90.3
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 6.1e-130 467.6 269 89.6
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 8.9e-129 463.8 268 89.9
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.4e-128 461.5 269 87.4
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 5.7e-128 461.1 269 88.8
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 5.7e-128 461.1 269 88.8
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 5.7e-128 461.1 269 88.8
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 5.7e-128 461.1 269 87.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 9.8e-128 460.3 269 87.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.2e-127 459.1 269 87.4
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 8.3e-127 457.2 269 87.7
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.8e-126 456.1 269 87.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 3.1e-126 455.3 269 87.4
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 3.1e-126 455.3 269 86.6
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 4.1e-126 454.9 269 87.4
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 5.4e-126 454.5 269 85.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 5.4e-126 454.5 269 85.5
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.2e-125 453.4 269 85.9
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 2.7e-125 452.2 269 86.2
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 2.7e-125 452.2 269 87.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 3.5e-125 451.8 269 86.6
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 4.5e-125 451.4 269 86.6
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 4.5e-125 451.4 269 85.1
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 2.3e-124 449.1 269 84.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.3e-124 449.1 269 84.4
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.3e-124 449.1 269 84.4
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 2.9e-124 448.7 269 85.9
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 3.8e-124 448.4 269 85.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 3.8e-124 448.4 269 86.2
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 5.0e-124 448.0 269 85.1
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 5.0e-124 448.0 269 85.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 6.6e-124 447.6 269 84.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 6.6e-124 447.6 269 85.5
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.6e-124 447.6 269 84.8
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 6.6e-124 447.6 269 84.8
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 8.6e-124 447.2 269 86.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.5e-123 446.4 269 85.9
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 1.5e-123 446.4 269 86.2
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 1.9e-123 446.0 269 85.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 2.5e-123 445.7 269 85.9
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 2.5e-123 445.7 269 86.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 4.3e-123 444.9 295 79.0
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 5.6e-123 444.5 269 85.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 9.5e-123 443.7 269 82.9
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 9.5e-123 443.7 269 83.6
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 2.1e-122 442.6 269 84.4
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 2.8e-122 442.2 269 85.1
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 2.8e-122 442.2 269 84.0
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 3.6e-122 441.8 270 84.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 3.6e-122 441.8 269 85.1
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 4.7e-122 441.4 269 84.0
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 4.7e-122 441.4 269 84.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.4e-121 439.9 269 83.6
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.8e-121 439.5 269 82.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 2.3e-121 439.1 270 83.3
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 3.0e-121 438.7 269 82.5
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 3.0e-121 438.7 269 83.6
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.0e-121 438.7 268 82.8
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 4.0e-121 438.3 269 83.6
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 8.9e-121 437.2 269 81.4
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 8.9e-121 437.2 269 81.4
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 8.9e-121 437.2 269 82.5
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.2e-120 436.8 268 82.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 1.5e-120 436.4 269 82.5
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 1.5e-120 436.4 270 82.2
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 2.0e-120 436.0 269 81.4
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 2.0e-120 436.0 259 84.9
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 2.0e-120 436.0 269 81.8
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 3.4e-120 435.3 269 81.4
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 3.4e-120 435.3 269 81.8
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 4.4e-120 434.9 269 81.0
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 7.5e-120 434.1 269 81.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 7.5e-120 434.1 269 81.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 7.5e-120 434.1 269 84.4
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 9.8e-120 433.7 275 82.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.7e-119 433.0 269 81.4
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 1.7e-119 433.0 269 82.9
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 1.7e-119 433.0 269 82.2
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.9e-119 432.2 269 80.7
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.1e-118 430.3 269 80.3
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.1e-118 430.3 269 80.7
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 5.4e-118 427.9 269 79.9
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.4e-118 427.9 269 81.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 7.0e-118 427.6 271 79.7
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 4.6e-117 424.9 269 79.6
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 4.6e-117 424.9 269 79.6
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 7.8e-117 424.1 271 79.3
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.3e-116 422.5 251 86.1
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.0e-116 422.2 269 78.8
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 8.6e-116 420.6 270 79.6
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 2.1e-114 416.0 269 78.1
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 4.7e-114 414.8 269 78.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.1e-113 413.7 269 77.3
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.8e-113 412.9 291 73.9
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 1.8e-113 412.9 254 82.7
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 3.1e-113 412.1 269 77.7
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.9e-113 410.6 269 78.1
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 4.4e-112 408.3 252 81.7
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.8e-112 407.9 256 80.9
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 2.9e-111 405.6 269 75.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 6.4e-111 404.4 269 76.2
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 8.3e-111 404.1 256 80.1
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.9e-110 402.9 295 68.8
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 3.5e-109 398.7 269 74.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 7.8e-109 397.5 258 81.8
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.5e-107 393.3 274 74.5
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.5e-107 392.5 273 73.3
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.5e-107 392.5 273 73.3
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.2e-106 390.2 242 81.0
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 8.1e-106 387.5 243 79.8
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.5e-104 383.3 273 71.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.5e-104 380.9 237 83.5
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 5.4e-102 374.8 270 70.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.4e-97 360.1 269 68.8
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.1e-93 346.3 217 81.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.1e-89 332.4 242 71.9
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.1e-81 305.8 193 79.8
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 9.9e-80 300.8 268 59.3
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 9.3e-78 294.3 269 55.8
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-70 270.8 156 84.0
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 2.7e-69 266.2 204 69.6
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.9e-67 260.0 148 85.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.5e-64 250.4 178 72.5
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.0e-55 221.1 156 71.8
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 9.4e-54 214.5 297 44.4
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 6.3e-50 201.8 159 69.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-47 194.1 126 69.0
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 5.3e-41 172.2 102 86.3
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 4.7e-37 159.1 78 93.6
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.6e-32 144.1 348 30.2
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.4e-27 125.9 61 93.4
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 9.1e-25 118.2 297 30.0
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.6e-21 107.5 57 84.2
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.8e-20 104.0 69 71.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.7e-19 99.0 72 70.8
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.0e-17 92.0 82 62.2
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 6.1e-13 79.0 80 52.5
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 5.9e-08 62.4 164 26.8
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 3.9e-07 59.7 55 56.4


User provided reference genes

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