Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 587 100.0
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 3.5e-298 1027.7 683 82.0
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 9.8e-285 983.0 683 78.3
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 8.3e-284 979.9 683 77.5
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 2.4e-283 978.4 683 77.9
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 4.9e-276 954.1 685 75.5
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 8.3e-276 953.4 683 75.7
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.4e-275 952.6 683 75.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 9.2e-275 949.9 683 75.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 4.6e-274 947.6 683 75.4
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 7.8e-274 946.8 683 75.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.3e-273 946.0 683 75.0
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 2.3e-273 945.3 683 74.2
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 2.3e-273 945.3 683 74.8
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 6.6e-273 943.7 683 74.2
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 1.9e-272 942.2 683 74.7
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 7.3e-272 940.3 683 74.4
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 7.3e-272 940.3 683 74.4
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 7.3e-272 940.3 683 74.4
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 1.2e-271 939.5 683 74.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 2.1e-271 938.7 683 74.4
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 2.8e-271 938.3 683 74.1
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 3.6e-271 937.9 683 74.2
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 8.1e-271 936.8 683 74.2
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.1e-270 936.4 683 73.5
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 3.1e-270 934.9 683 74.1
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 6.8e-270 933.7 683 74.1
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 1.5e-269 932.6 683 73.9
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 7.6e-269 930.2 683 73.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.3e-268 929.5 683 72.6
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 2.9e-268 928.3 683 73.2
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 4.9e-268 927.5 684 74.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 6.4e-268 927.2 683 73.5
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.9e-267 925.6 683 73.2
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.9e-267 925.6 683 73.2
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 2.4e-267 925.2 683 73.6
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 5.4e-267 924.1 683 73.1
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.7e-266 921.8 687 73.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 7.8e-266 920.2 683 73.4
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 8.7e-265 916.8 684 73.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 8.7e-265 916.8 684 72.8
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 1.1e-264 916.4 709 70.7
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 1.5e-264 916.0 683 72.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.9e-264 915.6 683 72.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 9.6e-264 913.3 701 71.8
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 9.6e-264 913.3 683 71.7
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 1.3e-263 912.9 684 72.5
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 3.6e-263 911.4 684 73.0
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 3.6e-263 911.4 684 73.0
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 4.8e-263 911.0 683 73.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.4e-262 908.7 683 71.0
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 2.4e-262 908.7 683 72.2
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.1e-262 908.3 683 71.3
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 4.0e-262 907.9 683 71.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.3e-262 907.5 694 71.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 9.0e-262 906.7 683 72.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.8e-261 904.0 711 69.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.6e-261 903.7 687 72.2
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.8e-260 901.4 689 71.6
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 8.4e-260 900.2 683 70.7
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.4e-259 899.4 683 70.7
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 5.4e-259 897.5 683 70.7
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 1.2e-258 896.3 683 70.1
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 1.2e-258 896.3 683 70.0
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 1.2e-258 896.3 683 70.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 1.6e-258 896.0 683 70.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 6.0e-258 894.0 684 69.9
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 1.0e-257 893.3 683 69.8
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 1.0e-257 893.3 683 69.8
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 1.7e-257 892.5 683 69.7
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 1.5e-256 889.4 706 69.4
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 1.5e-256 889.4 700 69.1
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.3e-256 888.3 683 69.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 3.3e-256 888.3 683 69.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.6e-255 885.9 683 69.1
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 1.6e-255 885.9 683 71.7
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.1e-254 883.2 683 69.1
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 4.0e-254 881.3 684 69.6
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 4.0e-254 881.3 683 70.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.9e-254 880.6 684 69.4
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 4.2e-251 871.3 685 67.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 4.2e-251 871.3 685 68.5
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 1.2e-250 869.8 683 68.7
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 3.5e-250 868.2 683 68.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 4.6e-250 867.8 683 69.1
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 5.1e-249 864.4 683 68.5
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 2.5e-248 862.1 685 68.6
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 1.6e-247 859.4 683 67.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.1e-247 859.0 728 64.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 3.1e-246 855.1 718 65.3
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 8.4e-244 847.0 758 63.5
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 8.4e-244 847.0 683 65.9
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.5e-243 845.5 695 67.3
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.2e-243 845.1 684 68.1
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.2e-242 843.2 683 66.5
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.5e-242 841.6 586 77.1
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.3e-240 835.1 712 64.7
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 5.7e-240 834.3 654 68.0
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.7e-239 831.6 585 75.2
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.2e-239 830.9 546 78.4
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 6.9e-238 827.4 684 65.2
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-235 819.3 545 76.5
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 9.3e-235 817.0 545 77.6
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.0e-233 813.5 702 64.0
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.2e-231 805.8 715 60.8
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 7.7e-229 797.3 547 74.4
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.7e-215 753.1 688 59.4
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.7e-215 753.1 688 59.4
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.7e-215 751.9 608 66.8
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.1e-211 740.3 706 57.4
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 8.0e-210 734.2 687 57.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 4.2e-203 711.8 686 57.0
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.9e-196 689.1 421 82.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.1e-190 670.6 684 57.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.5e-181 639.0 493 70.6
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.2e-173 614.0 544 58.3
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.2e-168 597.4 476 68.9
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 4.4e-168 595.5 544 55.1
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.9e-147 526.9 347 76.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.8e-137 493.8 261 97.7
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.4e-128 463.0 446 61.2
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.0e-127 461.5 279 84.9
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.3e-124 451.1 262 86.3
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 8.2e-114 415.2 595 42.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 2.3e-108 397.1 245 80.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.8e-106 390.2 236 85.2
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.9e-103 380.2 233 82.4
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.8e-97 360.9 774 31.5
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 8.5e-79 298.9 608 32.9
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.8e-76 289.3 178 79.8
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-71 275.0 148 89.2
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 7.3e-70 269.2 215 67.4
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 4.4e-67 260.0 195 70.8
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 6.4e-66 256.1 366 42.3
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-58 231.9 158 65.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 7.8e-56 222.6 189 62.4
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 8.9e-52 209.1 167 69.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.2e-50 204.5 274 47.1
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.2e-42 177.9 141 70.9
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 4.9e-42 176.8 203 56.2
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.6e-40 171.8 105 83.8
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.7e-40 171.0 217 50.2
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 5.4e-33 146.7 455 26.4
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.6e-29 135.2 100 71.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 3.1e-28 131.0 100 69.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 3.1e-28 131.0 100 69.0
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.9e-25 121.7 80 77.5
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 5.1e-23 113.6 169 45.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.1e-21 108.2 93 61.3
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.7e-21 107.5 63 81.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 4.0e-20 104.0 69 71.0
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 5.3e-20 103.6 153 46.4
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.0e-20 102.8 57 86.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 2.6e-19 101.3 77 67.5
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 2.6e-19 101.3 59 83.1
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 9.9e-19 99.4 50 100.0
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.5e-17 93.6 88 60.2
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.6e-16 92.0 51 92.2
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.8e-15 88.6 49 87.8
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.5e-14 85.5 66 68.2
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.9e-14 85.1 49 85.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.8e-12 78.6 52 78.8
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.8e-12 78.6 78 53.8
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 9.0e-12 76.3 40 95.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.4e-09 68.9 63 57.1
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.4e-09 68.9 59 61.0
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.1e-08 65.1 75 52.0


User provided reference genes

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