Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 1.8e-290 1001.9 512 100.0
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.9e-276 955.3 509 95.3
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 1.9e-255 885.6 510 88.2
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 1.1e-247 859.8 508 87.0
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 6.9e-242 840.5 513 84.0
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 2.2e-240 835.5 495 85.3
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 7.9e-238 827.0 508 82.3
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 8.7e-237 823.5 508 82.7
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.1e-236 823.2 506 83.4
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 1.1e-231 806.6 505 79.2
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 2.5e-231 805.4 497 80.9
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.2e-231 805.1 491 82.5
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 5.5e-231 804.3 510 80.4
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 9.3e-231 803.5 503 81.1
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 1.2e-230 803.1 494 81.4
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 6.0e-230 800.8 496 81.2
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 7.9e-230 800.4 496 81.2
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.3e-229 799.7 509 79.6
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.3e-229 798.9 496 81.2
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 6.7e-229 797.3 508 79.5
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 2.5e-228 795.4 502 80.3
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 9.6e-228 793.5 503 80.3
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 1.3e-227 793.1 510 79.6
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 1.6e-227 792.7 503 80.5
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.4e-226 789.6 526 77.0
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 4.1e-226 788.1 498 78.5
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 1.3e-224 783.1 482 83.0
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 2.9e-224 781.9 507 78.1
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 3.8e-224 781.6 499 77.8
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 6.5e-224 780.8 503 79.5
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 6.5e-224 780.8 507 78.1
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 9.3e-223 776.9 501 78.8
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.6e-222 776.2 503 79.3
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 2.1e-222 775.8 520 77.1
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 2.7e-222 775.4 499 77.2
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 3.5e-222 775.0 509 77.6
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 4.6e-222 774.6 507 77.1
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 6.1e-222 774.2 471 82.4
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 7.9e-222 773.9 494 79.6
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.8e-221 772.7 507 78.5
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 1.8e-221 772.7 498 76.9
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.8e-221 772.7 507 76.5
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 3.9e-221 771.5 510 77.8
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 6.7e-221 770.8 487 81.9
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 1.5e-220 769.6 511 77.5
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.9e-220 769.2 508 78.1
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 3.3e-220 768.5 500 77.4
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 3.3e-220 768.5 505 76.2
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 4.3e-220 768.1 515 77.1
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 7.4e-220 767.3 493 77.9
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 4.8e-219 764.6 500 77.4
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 5.3e-218 761.1 507 75.9
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 6.9e-218 760.8 497 77.5
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 1.2e-217 760.0 492 76.8
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.2e-217 760.0 502 76.3
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 2.0e-217 759.2 507 75.1
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 2.6e-217 758.8 489 76.7
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 3.4e-217 758.4 508 74.8
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 8.5e-216 753.8 494 75.9
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 2.5e-215 752.3 501 76.6
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.2e-214 750.0 509 76.0
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.0e-213 746.9 496 75.6
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 2.3e-213 745.7 496 76.0
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 3.0e-213 745.3 495 75.2
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 5.1e-213 744.6 503 74.4
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 6.7e-213 744.2 571 70.4
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 8.8e-213 743.8 491 76.6
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 5.7e-212 741.1 511 74.0
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 9.7e-212 740.3 505 75.0
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 1.3e-211 740.0 507 74.0
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 2.8e-211 738.8 490 75.5
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.4e-210 736.5 497 74.4
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 3.8e-208 728.4 501 74.5
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 1.9e-207 726.1 501 74.3
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 3.2e-207 725.3 515 72.0
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.2e-207 725.3 493 75.1
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.0e-205 720.3 498 74.3
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 3.9e-205 718.4 494 73.3
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 1.5e-204 716.5 499 73.9
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 3.7e-203 711.8 510 72.0
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 6.3e-203 711.1 498 74.1
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 1.4e-202 709.9 490 73.1
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 3.1e-202 708.8 438 82.0
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 5.3e-202 708.0 501 73.1
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 7.0e-202 707.6 494 74.1
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 1.2e-201 706.8 498 73.7
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 2.0e-201 706.1 494 73.9
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 3.5e-201 705.3 490 71.8
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 4.5e-201 704.9 494 73.9
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 4.5e-201 704.9 501 73.5
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 5.0e-200 701.4 473 74.6
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 8.5e-200 700.7 501 73.1
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 4.2e-199 698.4 497 72.8
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 4.7e-198 694.9 506 72.3
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.2e-190 670.2 507 68.0
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.0e-181 640.6 626 56.7
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.5e-180 636.7 388 81.4
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 6.3e-179 631.3 516 63.2
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 5.6e-175 618.2 466 70.2
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 2.8e-174 615.9 483 65.0
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 3.2e-170 602.4 502 61.2
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 3.5e-161 572.4 499 59.3
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 8.6e-160 567.8 504 58.9
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.7e-153 546.2 503 57.7
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.6e-150 535.8 340 81.5
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 9.9e-140 501.1 375 73.3
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 3.8e-131 472.6 410 58.8
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.6e-113 414.1 557 45.2
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.4e-106 391.0 264 73.1
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 3.1e-101 373.2 261 72.0
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 4.1e-85 319.7 280 61.8
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.3e-80 303.9 370 49.5
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.2e-80 302.8 460 43.3
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 5.9e-76 289.3 173 83.2
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 5.4e-69 266.2 189 68.3
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 9.2e-61 238.8 155 74.8
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.2e-60 238.4 142 78.2
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 5.0e-59 233.0 159 74.8
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 1.2e-55 221.9 140 83.6
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 1.8e-53 214.5 244 45.9
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 2.7e-52 210.7 131 84.0
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.7e-46 191.4 121 76.0
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.7e-43 181.4 149 61.1
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.3e-42 177.2 156 62.2
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.3e-38 165.2 297 39.7
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.9e-38 164.1 99 84.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 2.9e-38 164.1 99 84.8
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 2.9e-38 164.1 133 69.2
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 3.0e-35 154.1 109 73.4
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.9e-35 153.7 174 51.1
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 3.1e-32 144.1 217 40.6
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 1.5e-23 115.2 146 49.3
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.2e-20 105.5 79 72.2
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 7.3e-18 96.3 62 72.6
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 5.3e-16 90.1 64 75.0
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 7.6e-15 86.3 138 39.9
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 9.9e-15 85.9 188 33.0
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 1.1e-13 82.4 50 80.0
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 3.9e-11 73.9 62 62.9
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.4e-08 65.5 76 48.7
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 1.7e-06 58.5 111 33.3
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.9e-06 57.8 111 31.5


User provided reference genes

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