Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01634 Corylus avellana HOM05D004387 ORTHO05D005218 1.8e-47 192.2 96 100.0
Cfa006454 Carpinus fangiana HOM05D004387 ORTHO05D005218 3.9e-29 131.3 70 94.3
Cfa016818 Carpinus fangiana HOM05D004387 ORTHO05D005218 4.3e-28 127.9 70 92.9
CiPaw.09G038200 Carya illinoinensis HOM05D004387 ORTHO05D005218 5.6e-28 127.5 70 90.0
Haze_19856 Corylus avellana HOM05D004387 ORTHO05D005218 1.2e-27 126.3 76 85.5
QL02p103266 Quercus lobata HOM05D004387 ORTHO05D005218 2.1e-27 125.6 70 88.6
COL.COLO4_28283 Corchorus olitorius HOM05D004387 ORTHO05D005218 1.4e-26 122.9 70 87.1
Thecc.05G153400 Theobroma cacao HOM05D004387 ORTHO05D005218 1.4e-26 122.9 70 87.1
Sabra06G0035900 Salix brachista HOM05D004387 ORTHO05D005218 1.8e-26 122.5 70 85.7
Potri.006G051200 Populus trichocarpa HOM05D004387 ORTHO05D005218 6.8e-26 120.6 70 84.3
Manes.08G050500 Manihot esculenta HOM05D004387 ORTHO05D005218 1.2e-25 119.8 70 82.9
A09p17690 Brassica napus HOM05D004387 ORTHO05D005218 2.0e-25 119.0 70 80.0
BraA09t37397Z Brassica rapa HOM05D004387 ORTHO05D005218 2.0e-25 119.0 70 80.0
Duzib093G1767 Durio zibethinus HOM05D004387 ORTHO05D005218 2.0e-25 119.0 70 84.3
Gohir.D01G090600 Gossypium hirsutum HOM05D004387 ORTHO05D005218 2.0e-25 119.0 70 84.3
Gorai.002G116000 Gossypium raimondii HOM05D004387 ORTHO05D005218 2.0e-25 119.0 70 84.3
Atru.chr1.1097 Acer truncatum HOM05D004387 ORTHO05D005218 2.6e-25 118.6 70 82.9
Lj6g0019382 Lotus japonicus HOM05D004387 ORTHO05D005218 2.6e-25 118.6 70 82.9
Potri.016G055600 Populus trichocarpa HOM05D004387 ORTHO05D005218 2.6e-25 118.6 70 82.9
Lalb_Chr20g0110501 Lupinus albus HOM05D004387 ORTHO05D005218 3.4e-25 118.2 70 81.4
BNapus_Darmor_BZH_scaffold_155p00060 Brassica napus HOM05D004387 ORTHO05D005218 4.4e-25 117.9 70 78.6
C09p22030 Brassica napus HOM05D004387 ORTHO05D005218 4.4e-25 117.9 70 78.6
BolC9t55109H Brassica oleracea HOM05D004387 ORTHO05D005218 4.4e-25 117.9 70 78.6
arahy.Tifrunner.gnm1.ann1.02RJAW Arachis hypogaea HOM05D004387 ORTHO05D005218 5.8e-25 117.5 70 77.1
arahy.Tifrunner.gnm1.ann1.QD816I Arachis hypogaea HOM05D004387 ORTHO05D005218 5.8e-25 117.5 70 77.1
Gohir.A01G009000 Gossypium hirsutum HOM05D004387 ORTHO05D005218 5.8e-25 117.5 70 82.9
BcaC04g22217 Brassica carinata HOM05D004387 ORTHO05D005218 9.8e-25 116.7 70 77.1
Gorai.002G010400 Gossypium raimondii HOM05D004387 ORTHO05D005218 1.3e-24 116.3 70 82.9
Sp2g04520 Schrenkiella parvula HOM05D004387 ORTHO05D005218 1.3e-24 116.3 70 78.6
Thhalv10023611m.g Eutrema salsugineum HOM05D004387 ORTHO05D005218 1.7e-24 115.9 70 77.1
Gohir.D01G090350 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.7e-24 115.9 70 81.4
Gohir.D01G090850 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.7e-24 115.9 70 81.4
Aqoxy5G00267 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 2.2e-24 115.5 70 78.6
BcaB07g31201 Brassica carinata HOM05D004387 ORTHO05D005218 2.9e-24 115.2 70 77.1
Glyma.08G246800 Glycine max HOM05D004387 ORTHO05D005218 2.9e-24 115.2 70 78.6
Lalb_Chr01g0017301 Lupinus albus HOM05D004387 ORTHO05D005218 2.9e-24 115.2 70 78.6
TWI77G0383 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 2.9e-24 115.2 70 81.4
Oeu017945.1 Olea europaea HOM05D004387 ORTHO05D005218 3.7e-24 114.8 70 82.9
AT1G60080 Arabidopsis thaliana HOM05D004387 ORTHO05D005218 4.9e-24 114.4 70 75.7
Phvul.011G181200 Phaseolus vulgaris HOM05D004387 ORTHO05D005218 4.9e-24 114.4 70 78.6
TWI74G1664 Tripterygium wilfordii HOM05D004387 ORTHO05D005218 4.9e-24 114.4 70 80.0
VMungo0331G1303 Vigna mungo HOM05D004387 ORTHO05D005218 4.9e-24 114.4 70 77.1
CSS0003189 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 6.4e-24 114.0 70 81.4
Carub.0002s0514 Capsella rubella HOM05D004387 ORTHO05D005218 6.4e-24 114.0 70 77.1
Nn2g15223 Nelumbo nucifera HOM05D004387 ORTHO05D005218 6.4e-24 114.0 70 80.0
AL2G16570 Arabidopsis lyrata HOM05D004387 ORTHO05D005218 8.3e-24 113.6 70 77.1
Ciclev10005512m.g Citrus clementina HOM05D004387 ORTHO05D005218 8.3e-24 113.6 70 78.6
CARHR052860 Cardamine hirsuta HOM05D004387 ORTHO05D005218 1.1e-23 113.2 70 75.7
THA.LOC104823663 Tarenaya hassleriana HOM05D004387 ORTHO05D005218 1.1e-23 113.2 70 75.7
Gohir.A02G158900 Gossypium hirsutum HOM05D004387 ORTHO05D005218 1.4e-23 112.8 70 81.4
Glyma.14G145600 Glycine max HOM05D004387 ORTHO05D005218 2.4e-23 112.1 70 77.1
Dinv39602 Davidia involucrata HOM05D004387 ORTHO05D005218 3.2e-23 111.7 70 80.0
vmacro09074 Vaccinium macrocarpon HOM05D004387 ORTHO05D005218 3.2e-23 111.7 70 78.6
Lju124A41T49 Lonicera japonica HOM05D004387 ORTHO05D005218 4.1e-23 111.3 70 78.6
ClCG04G000130 Citrullus lanatus HOM05D004387 ORTHO05D005218 5.4e-23 110.9 71 78.9
Dinv12482 Davidia involucrata HOM05D004387 ORTHO05D005218 5.4e-23 110.9 70 78.6
Aa31LG2G10160 Aethionema arabicum HOM05D004387 ORTHO05D005218 1.2e-22 109.8 70 74.3
MELO3C023136.2 Cucumis melo HOM05D004387 ORTHO05D005218 1.2e-22 109.8 71 77.5
CsaV3_4G011700 Cucumis sativus L. HOM05D004387 ORTHO05D005218 1.2e-22 109.8 71 77.5
Sed0012804 Sechium edule HOM05D004387 ORTHO05D005218 1.2e-22 109.8 72 76.4
DCAR_013603 Daucus carota HOM05D004387 ORTHO05D005218 2.1e-22 109.0 70 78.6
Migut.K00090 Erythranthe guttata HOM05D004387 ORTHO05D005218 2.1e-22 109.0 70 75.7
PGR142G2016 Punica granatum HOM05D004387 ORTHO05D005218 2.7e-22 108.6 70 78.6
Actinidia17236 Actinidia chinensis HOM05D004387 ORTHO05D005218 3.5e-22 108.2 70 77.1
RcHm_v2.0_Chr3g0482341 Rosa chinensis HOM05D004387 ORTHO05D005218 3.5e-22 108.2 70 75.7
SGA_v2.0_scaffold273G46436 Striga asiatica HOM05D004387 ORTHO05D005218 3.5e-22 108.2 62 85.5
TPR.G24500 Trifolium pratense HOM05D004387 ORTHO05D005218 3.5e-22 108.2 70 74.3
MSTRG.10813 Avicennia marina HOM05D004387 ORTHO05D005218 4.6e-22 107.8 70 77.1
Psat6g037480 Pisum sativum HOM05D004387 ORTHO05D005218 4.6e-22 107.8 70 74.3
Rhsim09G0155500 Rhododendron simsii HOM05D004387 ORTHO05D005218 4.6e-22 107.8 62 83.9
CANSAT21G1698 Cannabis sativa HOM05D004387 ORTHO05D005218 7.8e-22 107.1 67 77.6
TAR633G2397 Trochodendron aralioides HOM05D004387 ORTHO05D005218 7.8e-22 107.1 70 77.1
Actinidia38546 Actinidia chinensis HOM05D004387 ORTHO05D005218 1.7e-21 105.9 70 75.7
Eucgr.A00059 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.7e-21 105.9 70 74.3
Peaxi162Scf00354g00222 Petunia axillaris HOM05D004387 ORTHO05D005218 1.7e-21 105.9 70 75.7
Eucgr.A00267 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.3e-21 105.5 70 72.9
Aqoxy2G02875 Aquilegia oxysepala HOM05D004387 ORTHO05D005218 3.9e-21 104.8 70 75.7
Eucgr.A00265 Eucalyptus grandis HOM05D004387 ORTHO05D005218 3.9e-21 104.8 70 74.3
SGA_v2.0_scaffold94G28486 Striga asiatica HOM05D004387 ORTHO05D005218 8.6e-21 103.6 62 82.3
ECA248G3203 Erigeron canadensis HOM05D004387 ORTHO05D005218 1.1e-20 103.2 62 79.0
GSVIVG01033276001 Vitis vinifera HOM05D004387 ORTHO05D005218 1.1e-20 103.2 66 77.3
Ca_03365_v3 Cicer arietinum L. HOM05D004387 ORTHO05D005218 1.5e-20 102.8 70 72.9
Lsat_1_v5_gn_5_161440 Lactuca sativa HOM05D004387 ORTHO05D005218 1.5e-20 102.8 70 71.4
Sopen10g030740 Solanum pennellii HOM05D004387 ORTHO05D005218 1.5e-20 102.8 70 72.9
Eucgr.A00063 Eucalyptus grandis HOM05D004387 ORTHO05D005218 1.9e-20 102.4 70 71.4
FvH4_6g23810 Fragaria vesca HOM05D004387 ORTHO05D005218 1.9e-20 102.4 70 72.9
FAN14G1242 Fragaria x ananassa HOM05D004387 ORTHO05D005218 1.9e-20 102.4 70 72.9
Sc13g0001750 Simmondsia chinensis HOM05D004387 ORTHO05D005218 1.9e-20 102.4 66 75.8
Nitab4.5_0004587g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 3.3e-20 101.7 70 72.9
MBI11_g09466_MAGBIO Magnolia biondii HOM05D004387 ORTHO05D005218 5.6e-20 100.9 61 78.7
FAN02G2904 Fragaria x ananassa HOM05D004387 ORTHO05D005218 7.3e-20 100.5 70 71.4
Hund05284 Selenicereus undatus HOM05D004387 ORTHO05D005218 7.3e-20 100.5 70 68.6
Medtr1g007060 Medicago truncatula HOM05D004387 ORTHO05D005218 9.5e-20 100.1 72 70.8
Solyc06g075390.4 Solanum lycopersicum HOM05D004387 ORTHO05D005218 1.6e-19 99.4 70 70.0
Sopen06g031800 Solanum pennellii HOM05D004387 ORTHO05D005218 1.6e-19 99.4 70 70.0
PGSC0003DMG400007507 Solanum tuberosum HOM05D004387 ORTHO05D005218 1.6e-19 99.4 70 70.0
Ah.13g076470 Amaranthus hybridus HOM05D004387 ORTHO05D005218 2.1e-19 99.0 70 65.7
FAN05G1657 Fragaria x ananassa HOM05D004387 ORTHO05D005218 2.1e-19 99.0 70 71.4
Nitab4.5_0009442g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 2.1e-19 99.0 70 70.0
PSO357G0544 Papaver somniferum HOM05D004387 ORTHO05D005218 2.8e-19 98.6 63 71.4
Prupe.7G061000 Prunus persica HOM05D004387 ORTHO05D005218 3.6e-19 98.2 70 70.0
CAN.G128.9 Capsicum annuum HOM05D004387 ORTHO05D005218 6.2e-19 97.4 62 75.8
MD12G1073800 Malus domestica HOM05D004387 ORTHO05D005218 8.1e-19 97.1 70 70.0
PSO170G6628 Papaver somniferum HOM05D004387 ORTHO05D005218 8.1e-19 97.1 63 71.4
CAN.G1001.5 Capsicum annuum HOM05D004387 ORTHO05D005218 1.4e-18 96.3 70 68.6
Cc07_g20870 Coffea canephora HOM05D004387 ORTHO05D005218 1.4e-18 96.3 62 75.8
Cc06_g17120 Coffea canephora HOM05D004387 ORTHO05D005218 1.8e-18 95.9 62 75.8
HanXRQChr01g0008751 Helianthus annuus HOM05D004387 ORTHO05D005218 2.3e-18 95.5 57 78.9
HanXRQChr06g0178491 Helianthus annuus HOM05D004387 ORTHO05D005218 2.3e-18 95.5 57 78.9
Nitab4.5_0005483g0010 Nicotiana tabacum HOM05D004387 ORTHO05D005218 3.1e-18 95.1 80 61.2
AUR62024448 Chenopodium quinoa HOM05D004387 ORTHO05D005218 4.0e-18 94.7 70 62.9
CSS0027602 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 8.9e-18 93.6 73 68.5
CSS0001525 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.2e-17 93.2 71 69.0
AUR62026038 Chenopodium quinoa HOM05D004387 ORTHO05D005218 1.2e-17 93.2 70 62.9
HPP92_019752 Vanilla planifolia HOM05D004387 ORTHO05D005218 2.0e-17 92.4 61 68.9
CSS0024704 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 3.4e-17 91.7 70 67.1
unitig_46.g18442 Utricularia gibba HOM05D004387 ORTHO05D005218 4.4e-17 91.3 97 52.6
CSS0010572 Camellia sinensis var. sinensis HOM05D004387 ORTHO05D005218 1.3e-16 89.7 73 60.3
EL10Ac3g07090 Beta vulgaris HOM05D004387 ORTHO05D005218 2.2e-16 89.0 70 58.6
SEGI_29832 Sequoiadendron giganteum HOM05D004387 ORTHO05D005218 2.9e-16 88.6 70 58.6
Pp3c19_14820 Physcomitrium patens HOM05D004387 ORTHO05D005218 1.1e-15 86.7 60 63.3
Mapoly0071s0030 Marchantia polymorpha HOM05D004387 ORTHO05D005218 1.4e-15 86.3 64 59.4
CDE04G2438 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 5.4e-15 84.3 74 54.1
ATR0626G351 Amborella trichopoda HOM05D004387 ORTHO05D005218 2.1e-14 82.4 64 57.8
Eucgr.A00069 Eucalyptus grandis HOM05D004387 ORTHO05D005218 2.7e-14 82.0 69 58.0
Lj4g0008518 Lotus japonicus HOM05D004387 ORTHO05D005218 4.6e-14 81.3 70 62.9
SMO169G0201 Selaginella moellendorffii HOM05D004387 ORTHO05D005218 1.3e-13 79.7 61 57.4
Zm00001eb317600 Zea mays HOM05D004387 ORTHO05D005218 3.9e-13 78.2 67 56.7
Zm00001eb036840 Zea mays HOM05D004387 ORTHO05D005218 5.1e-13 77.8 67 55.2
Cre10.g440900 Chlamydomonas reinhardtii HOM05D004387 ORTHO05D005218 6.6e-13 77.4 61 52.5
Zm00001eb161840 Zea mays HOM05D004387 ORTHO05D005218 6.6e-13 77.4 67 55.2
Cpa.g.sc3.336 Carica papaya HOM05D004387 ORTHO05D005218 1.5e-12 76.3 70 61.4
Zm00001eb175450 Zea mays HOM05D004387 ORTHO05D005218 1.9e-12 75.9 67 53.7
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 3.3e-12 75.1 50 74.0
CDE07G0852 Ceratophyllum demersum HOM05D004387 ORTHO05D005218 1.2e-09 66.6 48 60.4
Nn7g36292 Nelumbo nucifera HOM05D004387 ORTHO05D005218 3.4e-09 65.1 45 68.9
Os11g0311300 Oryza sativa ssp. japonica HOM05D004387 ORTHO05D005218 2.2e-08 62.4 50 60.0
CBR_g41407 Chara braunii HOM05D004387 ORTHO05D005218 1.1e-07 60.1 43 62.8
Eucgr.A00266 Eucalyptus grandis HOM05D004387 ORTHO05D005218 5.4e-07 57.8 38 68.4


User provided reference genes

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