Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0530941 Helianthus annuus HOM05D000809 ORTHO05D007733 4.5e-52 207.6 102 100.0
ECA238G4585 Erigeron canadensis HOM05D000809 ORTHO05D007733 8.0e-09 63.9 57 56.1
DCAR_012086 Daucus carota HOM05D000809 ORTHO05D007733 1.1e-08 63.5 57 54.4
HanXRQChr05g0137991 Helianthus annuus HOM05D000809 ORTHO05D007733 1.1e-08 63.5 57 56.1
CiPaw.03G234800 Carya illinoinensis HOM05D000809 ORTHO05D007733 1.8e-08 62.8 57 54.4
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 1.8e-08 62.8 57 54.4
Lsat_1_v5_gn_8_93401 Lactuca sativa HOM05D000809 ORTHO05D007733 1.8e-08 62.8 57 54.4
TPR.G31450 Trifolium pratense HOM05D000809 ORTHO05D007733 1.8e-08 62.8 57 54.4
Manes.16G070800 Manihot esculenta HOM05D000809 ORTHO05D007733 3.1e-08 62.0 57 50.9
SEGI_18085 Sequoiadendron giganteum HOM05D000809 ORTHO05D007733 3.1e-08 62.0 57 52.6
Atru.chr7.1304 Acer truncatum HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
CSS0004763 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
CSS0005642 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
CANSAT56G3015 Cannabis sativa HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Ca_25514_v3 Cicer arietinum L. HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
MELO3C025316.2 Cucumis melo HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
CsaV3_1G030840 Cucumis sativus L. HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Dinv36606 Davidia involucrata HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Duzib168G1885 Durio zibethinus HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Eucgr.C03953 Eucalyptus grandis HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Thhalv10002483m.g Eutrema salsugineum HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Glyma.07G089200 Glycine max HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Glyma.09G187800 Glycine max HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Medtr6g086600 Medicago truncatula HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Oeu000378.3 Olea europaea HOM05D000809 ORTHO05D007733 4.0e-08 61.6 50 58.0
PSO063G5751 Papaver somniferum HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
PSO782G1122 Papaver somniferum HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Potri.018G076600 Populus trichocarpa HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
PGR102G2432 Punica granatum HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Sp3g24440 Schrenkiella parvula HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Sed0012141 Sechium edule HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Sc08g0007210 Simmondsia chinensis HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Thecc.09G114200 Theobroma cacao HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
TWI63G1087 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
VMungo0464G1974 Vigna mungo HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
GSVIVG01015424001 Vitis vinifera HOM05D000809 ORTHO05D007733 4.0e-08 61.6 57 52.6
Ciclev10007988m.g Citrus clementina HOM05D000809 ORTHO05D007733 5.2e-08 61.2 57 50.9
Lj2g0016022 Lotus japonicus HOM05D000809 ORTHO05D007733 5.2e-08 61.2 57 52.6
Nn2g11810 Nelumbo nucifera HOM05D000809 ORTHO05D007733 5.2e-08 61.2 57 50.9
Psat1g039560 Pisum sativum HOM05D000809 ORTHO05D007733 5.2e-08 61.2 57 52.6
QL02p085975 Quercus lobata HOM05D000809 ORTHO05D007733 5.2e-08 61.2 57 50.9
TAR626G0858 Trochodendron aralioides HOM05D000809 ORTHO05D007733 5.2e-08 61.2 57 50.9
unitig_899.g15426 Utricularia gibba HOM05D000809 ORTHO05D007733 5.2e-08 61.2 57 50.9
Aqoxy7G01822 Aquilegia oxysepala HOM05D000809 ORTHO05D007733 6.8e-08 60.8 57 52.6
CAN.G1710.9 Capsicum annuum HOM05D000809 ORTHO05D007733 6.8e-08 60.8 41 63.4
Cc06_g09380 Coffea canephora HOM05D000809 ORTHO05D007733 6.8e-08 60.8 57 50.9
Migut.K00460 Erythranthe guttata HOM05D000809 ORTHO05D007733 6.8e-08 60.8 57 50.9
Nitab4.5_0001672g0130 Nicotiana tabacum HOM05D000809 ORTHO05D007733 6.8e-08 60.8 41 63.4
Nitab4.5_0003537g0040 Nicotiana tabacum HOM05D000809 ORTHO05D007733 6.8e-08 60.8 41 63.4
Peaxi162Scf00546g00322 Petunia axillaris HOM05D000809 ORTHO05D007733 6.8e-08 60.8 57 50.9
Phvul.004G160900 Phaseolus vulgaris HOM05D000809 ORTHO05D007733 6.8e-08 60.8 57 52.6
Solyc12g007010.2 Solanum lycopersicum HOM05D000809 ORTHO05D007733 6.8e-08 60.8 41 63.4
Sopen12g002980 Solanum pennellii HOM05D000809 ORTHO05D007733 6.8e-08 60.8 41 63.4
PGSC0003DMG400000383 Solanum tuberosum HOM05D000809 ORTHO05D007733 6.8e-08 60.8 41 63.4
SGA_v2.0_scaffold109G31030 Striga asiatica HOM05D000809 ORTHO05D007733 6.8e-08 60.8 57 50.9
ATR0037G048 Amborella trichopoda HOM05D000809 ORTHO05D007733 8.9e-08 60.5 41 61.0
MSTRG.10680 Avicennia marina HOM05D000809 ORTHO05D007733 8.9e-08 60.5 57 49.1
BcaC06g32603 Brassica carinata HOM05D000809 ORTHO05D007733 8.9e-08 60.5 57 50.9
A03p58410 Brassica napus HOM05D000809 ORTHO05D007733 8.9e-08 60.5 57 50.9
C07p56430 Brassica napus HOM05D000809 ORTHO05D007733 8.9e-08 60.5 57 50.9
BolC7t46122H Brassica oleracea HOM05D000809 ORTHO05D007733 8.9e-08 60.5 57 50.9
BraA03t14902Z Brassica rapa HOM05D000809 ORTHO05D007733 8.9e-08 60.5 57 50.9
AUR62011020 Chenopodium quinoa HOM05D000809 ORTHO05D007733 8.9e-08 60.5 63 47.6
TWI34G1334 Tripterygium wilfordii HOM05D000809 ORTHO05D007733 8.9e-08 60.5 57 50.9
THA.LOC104808749 Tarenaya hassleriana HOM05D000809 ORTHO05D007733 1.2e-07 60.1 57 50.9
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 1.2e-07 60.1 57 49.1
Actinidia07419 Actinidia chinensis HOM05D000809 ORTHO05D007733 1.5e-07 59.7 57 50.9
Aa31LG8G11120 Aethionema arabicum HOM05D000809 ORTHO05D007733 1.5e-07 59.7 41 61.0
AL3G39860 Arabidopsis lyrata HOM05D000809 ORTHO05D007733 1.5e-07 59.7 57 50.9
AT3G24430 Arabidopsis thaliana HOM05D000809 ORTHO05D007733 1.5e-07 59.7 57 50.9
Carub.0003s2473 Capsella rubella HOM05D000809 ORTHO05D007733 1.5e-07 59.7 57 50.9
CDE04G2267 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 2.0e-07 59.3 57 49.1
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 2.0e-07 59.3 57 52.6
SalBow1G2443 Salvia bowleyana HOM05D000809 ORTHO05D007733 2.6e-07 58.9 50 54.0
CARHR100520 Cardamine hirsuta HOM05D000809 ORTHO05D007733 4.4e-07 58.2 57 49.1
Cfa003287 Carpinus fangiana HOM05D000809 ORTHO05D007733 5.8e-07 57.8 57 50.9
CDE06G2677 Ceratophyllum demersum HOM05D000809 ORTHO05D007733 5.8e-07 57.8 40 60.0
Gohir.A05G021400 Gossypium hirsutum HOM05D000809 ORTHO05D007733 5.8e-07 57.8 57 50.9
Gohir.D05G022766 Gossypium hirsutum HOM05D000809 ORTHO05D007733 5.8e-07 57.8 57 50.9
Gohir.D05G022900 Gossypium hirsutum HOM05D000809 ORTHO05D007733 5.8e-07 57.8 57 50.9
Gorai.009G023100 Gossypium raimondii HOM05D000809 ORTHO05D007733 5.8e-07 57.8 57 50.9
Nn8g39257 Nelumbo nucifera HOM05D000809 ORTHO05D007733 5.8e-07 57.8 57 50.9
arahy.Tifrunner.gnm1.ann1.G2DL39 Arachis hypogaea HOM05D000809 ORTHO05D007733 9.8e-07 57.0 36 66.7
arahy.Tifrunner.gnm1.ann1.JACH1V Arachis hypogaea HOM05D000809 ORTHO05D007733 9.8e-07 57.0 36 66.7
Cpa.g.sc23.132 Carica papaya HOM05D000809 ORTHO05D007733 9.8e-07 57.0 57 50.9
Haze_25686 Corylus avellana HOM05D000809 ORTHO05D007733 9.8e-07 57.0 63 46.0
Lalb_Chr24g0397641 Lupinus albus HOM05D000809 ORTHO05D007733 9.8e-07 57.0 36 66.7
vmacro20666 Vaccinium macrocarpon HOM05D000809 ORTHO05D007733 9.8e-07 57.0 36 66.7
AUR62033393 Chenopodium quinoa HOM05D000809 ORTHO05D007733 1.3e-06 56.6 33 72.7
Mapoly0100s0060 Marchantia polymorpha HOM05D000809 ORTHO05D007733 1.3e-06 56.6 57 45.6
Pp3c19_20070 Physcomitrium patens HOM05D000809 ORTHO05D007733 1.3e-06 56.6 57 47.4
Zm00001eb089070 Zea mays HOM05D000809 ORTHO05D007733 1.3e-06 56.6 57 47.4
HPP92_006444 Vanilla planifolia HOM05D000809 ORTHO05D007733 1.7e-06 56.2 41 56.1
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 2.2e-06 55.8 34 79.4
SMO118G0383 Selaginella moellendorffii HOM05D000809 ORTHO05D007733 2.2e-06 55.8 53 47.2
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 2.9e-06 55.5 50 62.0
AagrBONN_evm.TU.Sc2ySwM_228.454 Anthoceros agrestis HOM05D000809 ORTHO05D007733 3.7e-06 55.1 53 45.3
FvH4_1g05310 Fragaria vesca HOM05D000809 ORTHO05D007733 4.9e-06 54.7 57 49.1
FAN19G0453 Fragaria x ananassa HOM05D000809 ORTHO05D007733 4.9e-06 54.7 57 49.1
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 4.9e-06 54.7 57 49.1
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 4.9e-06 54.7 57 49.1
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 4.9e-06 54.7 50 60.0
RcHm_v2.0_Chr2g0091011 Rosa chinensis HOM05D000809 ORTHO05D007733 4.9e-06 54.7 57 49.1
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 6.4e-06 54.3 34 76.5
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 6.4e-06 54.3 33 84.8
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 8.3e-06 53.9 34 73.5
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 8.3e-06 53.9 34 76.5
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 8.3e-06 53.9 34 79.4
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 8.3e-06 53.9 34 79.4
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 8.3e-06 53.9 34 76.5


User provided reference genes

Program Settings