Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0522411 Helianthus annuus HOM05D000104 ORTHO05D004024 1.8e-260 902.1 490 100.0
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 7.3e-249 863.6 569 85.8
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 5.1e-178 628.2 566 66.1
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 2.2e-160 569.7 571 61.5
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 3.2e-148 529.3 560 58.9
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 2.2e-136 490.0 564 55.7
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 8.6e-133 478.0 593 53.1
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 2.0e-129 466.8 584 51.2
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 4.4e-129 465.7 564 54.6
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 2.4e-127 459.9 557 54.8
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 6.0e-126 455.3 583 51.1
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 1.0e-125 454.5 558 53.0
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 3.3e-124 449.5 599 50.4
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 6.8e-122 441.8 588 50.9
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 3.4e-121 439.5 589 48.9
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 1.3e-120 437.6 582 50.2
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 6.4e-120 435.3 594 49.2
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 1.1e-119 434.5 585 50.6
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 1.4e-119 434.1 577 48.4
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 1.4e-119 434.1 586 50.2
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 1.9e-119 433.7 617 48.3
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 2.4e-119 433.3 589 48.2
COL.COLO4_12730 Corchorus olitorius HOM05D000104 ORTHO05D004024 4.1e-119 432.6 586 49.0
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.1e-119 432.6 585 49.6
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 5.4e-119 432.2 592 49.2
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 9.2e-119 431.4 582 49.7
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 9.2e-119 431.4 585 49.1
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 9.2e-119 431.4 582 50.0
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 9.2e-119 431.4 589 48.2
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.7e-118 429.9 591 49.4
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.7e-118 429.9 588 49.5
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.7e-118 429.9 588 49.5
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 2.7e-118 429.9 583 49.2
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 3.5e-118 429.5 593 48.4
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 3.5e-118 429.5 591 49.2
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 3.5e-118 429.5 578 49.7
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 4.6e-118 429.1 588 49.5
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.0e-117 427.9 585 49.1
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 1.0e-117 427.9 586 49.0
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 1.3e-117 427.6 592 48.6
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.7e-117 427.2 588 49.1
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 1.7e-117 427.2 583 49.1
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.3e-117 426.8 585 48.9
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 2.3e-117 426.8 591 49.7
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 3.0e-117 426.4 582 49.3
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 3.0e-117 426.4 587 49.2
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 6.6e-117 425.2 591 49.1
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 8.6e-117 424.9 581 48.7
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 8.6e-117 424.9 598 48.3
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 1.9e-116 423.7 598 48.3
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 3.3e-116 422.9 544 49.6
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 5.6e-116 422.2 580 49.3
Sabra14G0062700 Salix brachista HOM05D000104 ORTHO05D004024 7.3e-116 421.8 586 49.1
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 9.5e-116 421.4 580 49.3
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.2e-115 421.0 591 47.7
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 1.6e-115 420.6 550 48.9
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 1.6e-115 420.6 580 48.8
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.7e-115 419.1 588 48.3
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 8.1e-115 418.3 582 49.0
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 8.1e-115 418.3 581 49.1
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 8.1e-115 418.3 579 48.9
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 8.1e-115 418.3 585 48.7
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.1e-114 417.9 583 48.9
Lalb_Chr17g0339481 Lupinus albus HOM05D000104 ORTHO05D004024 1.1e-114 417.9 581 49.1
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 1.8e-114 417.2 590 47.8
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 1.8e-114 417.2 573 47.3
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 2.3e-114 416.8 583 47.3
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 4.0e-114 416.0 579 46.6
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 5.2e-114 415.6 579 48.9
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 8.9e-114 414.8 587 49.1
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 1.5e-113 414.1 584 46.9
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 2.0e-113 413.7 587 48.9
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 9.9e-113 411.4 587 47.7
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 1.3e-112 411.0 578 48.8
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 1.7e-112 410.6 586 48.0
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 2.2e-112 410.2 586 48.3
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 4.9e-112 409.1 584 47.9
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 4.9e-112 409.1 574 47.2
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 8.4e-112 408.3 589 48.2
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 1.1e-111 407.9 589 47.2
VMungo1383G0951 Vigna mungo HOM05D000104 ORTHO05D004024 1.4e-111 407.5 577 46.8
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 2.4e-111 406.8 580 45.9
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 3.2e-111 406.4 590 47.5
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 7.1e-111 405.2 586 48.1
Nitab4.5_0000583g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004024 2.7e-110 403.3 585 46.5
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 3.5e-110 402.9 584 47.9
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 3.5e-110 402.9 573 48.7
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 4.6e-110 402.5 582 47.9
Nitab4.5_0006018g0100 Nicotiana tabacum HOM05D000104 ORTHO05D004024 4.6e-110 402.5 585 46.7
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 4.6e-110 402.5 583 47.5
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 4.6e-110 402.5 588 47.1
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 1.0e-109 401.4 588 47.1
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 1.0e-109 401.4 574 46.0
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 1.3e-109 401.0 583 48.0
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 1.7e-109 400.6 581 47.3
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 3.0e-109 399.8 584 46.6
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 3.0e-109 399.8 590 46.6
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 3.0e-109 399.8 584 47.3
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 3.0e-109 399.8 592 47.5
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 6.6e-109 398.7 574 45.3
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 3.3e-108 396.4 586 44.7
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 7.3e-108 395.2 588 47.3
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 9.6e-108 394.8 579 48.4
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 1.6e-107 394.0 588 44.9
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 2.1e-107 393.7 596 45.0
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 2.8e-107 393.3 591 46.5
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 6.2e-107 392.1 572 47.2
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.4e-106 391.0 590 46.4
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 4.0e-106 389.4 603 45.4
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 8.9e-106 388.3 575 45.9
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 7.6e-105 385.2 579 46.3
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 9.9e-105 384.8 579 45.9
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 1.7e-104 384.0 593 45.7
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 2.9e-104 383.3 576 45.1
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 2.9e-104 383.3 584 45.9
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 8.4e-104 381.7 579 44.9
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 8.4e-104 381.7 595 44.9
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 1.1e-103 381.3 577 45.1
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 1.4e-103 380.9 578 45.7
Rhsim01G0162900 Rhododendron simsii HOM05D000104 ORTHO05D004024 4.2e-103 379.4 595 46.2
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 7.1e-103 378.6 593 45.7
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 1.2e-102 377.9 579 45.8
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 7.8e-102 375.2 580 45.7
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 1.3e-101 374.4 580 45.2
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 1.7e-101 374.0 580 45.2
CDE02G0245 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 8.7e-101 371.7 588 46.1
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 1.5e-100 370.9 580 44.8
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 3.3e-100 369.8 592 44.3
C03p30350 Brassica napus HOM05D000104 ORTHO05D004024 7.3e-100 368.6 578 44.6
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 9.6e-100 368.2 578 44.5
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 4.8e-99 365.9 581 45.1
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 8.1e-99 365.2 596 45.5
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 1.8e-98 364.0 578 44.1
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 3.1e-98 363.2 579 44.4
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 1.2e-97 361.3 581 44.6
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 2.0e-97 360.5 581 44.6
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 1.7e-93 347.4 603 41.3
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 1.5e-92 344.4 484 48.6
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 1.8e-90 337.4 509 48.3
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 4.0e-90 336.3 471 48.8
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 5.1e-85 319.3 577 40.9
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 8.1e-83 312.0 513 45.8
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 1.1e-76 291.6 499 41.5
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 4.5e-73 279.6 595 37.6
SEGI_34234 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 2.8e-67 260.4 622 36.7
SMO351G0468 Selaginella moellendorffii HOM05D000104 ORTHO05D004024 4.5e-57 226.5 551 35.8
CDE06G1551 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 1.6e-54 218.0 127 89.0
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 5.1e-53 213.0 660 33.2
Os02g0114000 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 9.1e-50 202.2 372 41.1
Pp3c13_14440 Physcomitrium patens HOM05D000104 ORTHO05D004024 5.9e-49 199.5 614 30.9
Pp3c3_15820 Physcomitrium patens HOM05D000104 ORTHO05D004024 1.6e-46 191.4 620 30.2
AagrBONN_evm.TU.Sc2ySwM_228.1015 Anthoceros agrestis HOM05D000104 ORTHO05D004024 1.0e-45 188.7 604 32.0
CDE06G2476 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 2.3e-45 187.6 345 39.4
HPP92_025786 Vanilla planifolia HOM05D000104 ORTHO05D004024 5.5e-39 166.4 367 39.2
HPP92_025794 Vanilla planifolia HOM05D000104 ORTHO05D004024 2.1e-38 164.5 314 42.7
SEGI_32037 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 3.4e-36 157.1 127 66.1
Psat5g241000 Pisum sativum HOM05D000104 ORTHO05D026582 3.8e-32 143.7 158 51.9
CBR_g12457 Chara braunii HOM05D000104 ORTHO05D004024 3.6e-30 137.1 96 72.9
THA.LOC104827600 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 8.6e-24 115.9 89 61.8
C07p31570 Brassica napus HOM05D000104 ORTHO05D004024 8.0e-14 82.8 70 52.9
BcaC06g34218 Brassica carinata HOM05D000104 ORTHO05D004024 1.8e-13 81.6 200 39.5
MCO16G286 Micromonas commoda HOM05D000104 ORTHO05D004024 2.9e-11 74.3 215 34.9
BcaC06g34217 Brassica carinata HOM05D000104 ORTHO05D004024 9.2e-10 69.3 138 32.6
PRCOL_00004212 Prasinoderma coloniale HOM05D000104 ORTHO05D004024 2.7e-09 67.8 94 41.5
HPP92_025787 Vanilla planifolia HOM05D000104 ORTHO05D026582 1.0e-08 65.9 102 38.2
HPP92_025795 Vanilla planifolia HOM05D000104 ORTHO05D026582 1.0e-08 65.9 102 38.2
Lj3A741T68 Lonicera japonica HOM05D000104 ORTHO05D006391 9.5e-07 59.3 85 44.7
C07p31560 Brassica napus HOM05D000104 ORTHO05D004024 1.2e-06 58.9 54 59.3
Eucgr.B01100 Eucalyptus grandis HOM05D000104 ORTHO05D006391 1.2e-06 58.9 85 45.9
MD01G1206100 Malus domestica HOM05D000104 ORTHO05D004024 1.6e-06 58.5 113 31.9
MD13G1186900 Malus domestica HOM05D000104 ORTHO05D006391 1.6e-06 58.5 85 44.7
COL.COLO4_06204 Corchorus olitorius HOM05D000104 ORTHO05D006391 2.8e-06 57.8 84 42.9
Lj5g0020197 Lotus japonicus HOM05D000104 ORTHO05D006391 2.8e-06 57.8 85 43.5
Nitab4.5_0000144g0090 Nicotiana tabacum HOM05D000104 ORTHO05D006391 3.6e-06 57.4 85 44.7
Nitab4.5_0000180g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006391 3.6e-06 57.4 85 44.7
Solyc01g079690.4 Solanum lycopersicum HOM05D000104 ORTHO05D006391 3.6e-06 57.4 85 44.7
Sopen01g031470 Solanum pennellii HOM05D000104 ORTHO05D006391 3.6e-06 57.4 85 44.7
MD16G1187800 Malus domestica HOM05D000104 ORTHO05D006391 4.7e-06 57.0 85 43.5
PGR142G0455 Punica granatum HOM05D000104 ORTHO05D006391 4.7e-06 57.0 85 44.7
Rhsim04G0204200 Rhododendron simsii HOM05D000104 ORTHO05D006391 6.2e-06 56.6 85 42.4
Atru.chr4.2520 Acer truncatum HOM05D000104 ORTHO05D006391 8.1e-06 56.2 85 43.5
CAN.G69.9 Capsicum annuum HOM05D000104 ORTHO05D006391 8.1e-06 56.2 85 43.5
CARHR080510 Cardamine hirsuta HOM05D000104 ORTHO05D006391 8.1e-06 56.2 85 41.2
Thhalv10019947m.g Eutrema salsugineum HOM05D000104 ORTHO05D006391 8.1e-06 56.2 85 41.2
Prupe.1G154600 Prunus persica HOM05D000104 ORTHO05D006391 8.1e-06 56.2 85 43.5
THA.LOC104818783 Tarenaya hassleriana HOM05D000104 ORTHO05D006391 8.1e-06 56.2 85 43.5


User provided reference genes

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