Gene: Cpa.g.sc11.24
General Information
Structural Information
- Species Carica papaya
- Gene Identifier Cpa.g.sc11.24
- Transcript Identifier Cpa.t.sc11.24
- Gene Type Coding gene
- Location supercontig_11 : 379824-389806 : positive
Gene Family Information
- ID HOM05D000104
- #Genes/#Species 3097/100
- Phylogenetic origin
- ID ORTHO05D004024
- #Genes/#Species 194/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- pacid 16405688
- tid PAC:16405688
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010199 | ISO | PLAZA Integrative Orthology | organ boundary specification between lateral organs and the meristem | AT2G46020 |
| GO:1903798 | ISO | PLAZA Integrative Orthology | regulation of production of miRNAs involved in gene silencing by miRNA | AT2G46020 |
| GO:0090691 | ISO | PLAZA Integrative Orthology | formation of plant organ boundary | AT2G46020 |
| GO:1900036 | ISO | PLAZA Integrative Orthology | positive regulation of cellular response to heat | AT2G46020 |
| GO:0010050 | ISO | PLAZA Integrative Orthology | vegetative phase change | AT2G46020 |
| GO:0006338 | ISO | PLAZA Integrative Orthology | chromatin remodeling | AT2G46020 |
| GO:0008283 | ISO | PLAZA Integrative Orthology | cell population proliferation | AT2G46020 |
| GO:0043044 | IEA | InterPro | ATP-dependent chromatin remodeling | |
| GO:0040029 | IEA | InterPro | regulation of gene expression, epigenetic | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT2G46020 |
| GO:0003682 | ISO | PLAZA Integrative Orthology | chromatin binding | AT2G46020 |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0008094 | IEA | InterPro | ATPase, acting on DNA | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G46020 |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
| IPR001487 | Bromodomain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR031056 | BRAHMA (BRM) ATPase |
| IPR001650 | Helicase, C-terminal |
| IPR000330 | SNF2, N-terminal |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR036427 | Bromodomain-like superfamily |
| Mapman id | Description |
|---|---|
| 12.4.1.1.1 | Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU |