Gene: Sopen01g038570
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g038570
- Transcript Identifier Sopen01g038570.1
- Gene Type Coding gene
- Location Spenn-ch01 : 96458397-96469822 : positive
Gene Family Information
- ID HOM05D000104
- #Genes/#Species 3097/100
- Phylogenetic origin
- ID ORTHO05D004024
- #Genes/#Species 194/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen01g038570.1
Descriptions
- Description Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D. | BRAHMA (BRM) | FUNCTIONS IN: helicase activity, transcription regulator activity, DNA binding, ATP binding | INVOLVED IN: ATP-dependent chromatin remodeling, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic | LOCATED IN: cytosol, nucleus, chromatin remodeling complex | EXPRESSED IN: 31 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , Bromodomain , SNF2-related | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0010199 | ISO | PLAZA Integrative Orthology | organ boundary specification between lateral organs and the meristem | AT2G46020 |
GO:1903798 | ISO | PLAZA Integrative Orthology | regulation of production of miRNAs involved in gene silencing by miRNA | AT2G46020 |
GO:0090691 | ISO | PLAZA Integrative Orthology | formation of plant organ boundary | AT2G46020 |
GO:1900036 | ISO | PLAZA Integrative Orthology | positive regulation of cellular response to heat | AT2G46020 |
GO:0010050 | ISO | PLAZA Integrative Orthology | vegetative phase change | AT2G46020 |
GO:0006338 | ISO | PLAZA Integrative Orthology | chromatin remodeling | AT2G46020 |
GO:0008283 | ISO | PLAZA Integrative Orthology | cell population proliferation | AT2G46020 |
GO:0043044 | IEA | InterPro | ATP-dependent chromatin remodeling | |
GO:0040029 | IEA | InterPro | regulation of gene expression, epigenetic | |
GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT2G46020 |
GO:0003682 | ISO | PLAZA Integrative Orthology | chromatin binding | AT2G46020 |
GO:0005524 | IEA | InterPro | ATP binding | |
GO:0008094 | IEA | InterPro | ATPase, acting on DNA | |
GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G46020 |
GO:0005634 | IEA | InterPro | nucleus |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
IPR001487 | Bromodomain |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
IPR001650 | Helicase, C-terminal |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
IPR036427 | Bromodomain-like superfamily |
IPR038718 | SNF2-like, N-terminal domain superfamily |
IPR000330 | SNF2, N-terminal |
IPR031056 | BRAHMA (BRM) ATPase |
Mapman id | Description |
---|---|
12.4.1.1.1 | Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU |