Gene: Sopen01g038570

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g038570
  • Transcript Identifier Sopen01g038570.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 96458397-96469822 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g038570.1

Descriptions

  • Description Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D. | BRAHMA (BRM) | FUNCTIONS IN: helicase activity, transcription regulator activity, DNA binding, ATP binding | INVOLVED IN: ATP-dependent chromatin remodeling, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic | LOCATED IN: cytosol, nucleus, chromatin remodeling complex | EXPRESSED IN: 31 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , Bromodomain , SNF2-related | BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010199
ISO
PLAZA Integrative Orthologyorgan boundary specification between lateral organs and the meristem AT2G46020
GO:1903798
ISO
PLAZA Integrative Orthologyregulation of production of miRNAs involved in gene silencing by miRNA AT2G46020
GO:0090691
ISO
PLAZA Integrative Orthologyformation of plant organ boundary AT2G46020
GO:1900036
ISO
PLAZA Integrative Orthologypositive regulation of cellular response to heat AT2G46020
GO:0010050
ISO
PLAZA Integrative Orthologyvegetative phase change AT2G46020
GO:0006338
ISO
PLAZA Integrative Orthologychromatin remodeling AT2G46020
GO:0008283
ISO
PLAZA Integrative Orthologycell population proliferation AT2G46020
GO:0043044
IEA
InterProATP-dependent chromatin remodeling
GO:0040029
IEA
InterProregulation of gene expression, epigenetic
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT2G46020
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT2G46020
GO:0005524
IEA
InterProATP binding
GO:0008094
IEA
InterProATPase, acting on DNA
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G46020
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014978 Glutamine-Leucine-Glutamine, QLQ
IPR001487 Bromodomain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR036427 Bromodomain-like superfamily
IPR038718 SNF2-like, N-terminal domain superfamily
IPR000330 SNF2, N-terminal
IPR031056 BRAHMA (BRM) ATPase
Mapman id Description
12.4.1.1.1 Chromatin organisation.nucleosome remodeling.SWI/SNF chromatin remodeling complexes.core modules.ATPase component SYD/BRM/MINU