Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0458481 Helianthus annuus HOM05D001702 ORTHO05D221181 1.7e-41 172.2 84 100.0
Lsat_1_v5_gn_5_51160 Lactuca sativa HOM05D001702 ORTHO05D001791 7.6e-13 77.0 47 68.1
HanXRQChr03g0079471 Helianthus annuus HOM05D001702 ORTHO05D001791 9.9e-13 76.6 47 68.1
HanXRQChr13g0410871 Helianthus annuus HOM05D001702 ORTHO05D001791 4.9e-12 74.3 44 70.5
HanXRQChr13g0410851 Helianthus annuus HOM05D001702 ORTHO05D001791 8.4e-12 73.6 81 48.1
ECA240G2914 Erigeron canadensis HOM05D001702 ORTHO05D001791 1.1e-11 73.2 47 66.0
Migut.L00292 Erythranthe guttata HOM05D001702 ORTHO05D001791 3.2e-11 71.6 44 70.5
Gorai.006G075100 Gossypium raimondii HOM05D001702 ORTHO05D001791 3.2e-11 71.6 47 61.7
Haze_01045 Corylus avellana HOM05D001702 ORTHO05D001791 5.4e-11 70.9 91 44.0
Gohir.D09G060500 Gossypium hirsutum HOM05D001702 ORTHO05D001791 7.1e-11 70.5 47 59.6
Cc03_g02470 Coffea canephora HOM05D001702 ORTHO05D001791 1.2e-10 69.7 47 59.6
Dinv44437 Davidia involucrata HOM05D001702 ORTHO05D001791 1.2e-10 69.7 47 61.7
Lj6A668G45 Lonicera japonica HOM05D001702 ORTHO05D001791 1.2e-10 69.7 47 61.7
Dinv38333 Davidia involucrata HOM05D001702 ORTHO05D001791 1.6e-10 69.3 47 61.7
TAR362G0176 Trochodendron aralioides HOM05D001702 ORTHO05D001791 2.1e-10 68.9 43 65.1
Atru.chr3.1950 Acer truncatum HOM05D001702 ORTHO05D001791 3.5e-10 68.2 46 60.9
Ciclev10004711m.g Citrus clementina HOM05D001702 ORTHO05D001791 3.5e-10 68.2 47 59.6
Gohir.A09G061500 Gossypium hirsutum HOM05D001702 ORTHO05D001791 3.5e-10 68.2 46 60.9
unitig_37.g13013 Utricularia gibba HOM05D001702 ORTHO05D001791 3.5e-10 68.2 47 57.4
COL.COLO4_25221 Corchorus olitorius HOM05D001702 ORTHO05D001791 4.6e-10 67.8 46 63.0
Eucgr.J00263 Eucalyptus grandis HOM05D001702 ORTHO05D001791 4.6e-10 67.8 46 60.9
SGA_v2.0_scaffold371G50140 Striga asiatica HOM05D001702 ORTHO05D001791 6.0e-10 67.4 47 61.7
MSTRG.21820 Avicennia marina HOM05D001702 ORTHO05D001791 7.8e-10 67.0 47 61.7
Hma1.2p1_0078F.1_g040870 Hydrangea macrophylla HOM05D001702 ORTHO05D001791 7.8e-10 67.0 81 46.9
Manes.12G070400 Manihot esculenta HOM05D001702 ORTHO05D001791 7.8e-10 67.0 46 60.9
Potri.010G019000 Populus trichocarpa HOM05D001702 ORTHO05D001791 7.8e-10 67.0 46 60.9
Sabra10G0010400 Salix brachista HOM05D001702 ORTHO05D001791 7.8e-10 67.0 46 60.9
SGA_v2.0_scaffold89G27561 Striga asiatica HOM05D001702 ORTHO05D001791 7.8e-10 67.0 47 59.6
Thecc.04G275800 Theobroma cacao HOM05D001702 ORTHO05D001791 7.8e-10 67.0 46 58.7
TWI73G0800 Tripterygium wilfordii HOM05D001702 ORTHO05D001791 7.8e-10 67.0 46 60.9
QL06p006997 Quercus lobata HOM05D001702 ORTHO05D001791 1.3e-09 66.2 82 46.3
SalBow1G6796 Salvia bowleyana HOM05D001702 ORTHO05D001791 1.3e-09 66.2 47 63.8
ATR0706G111 Amborella trichopoda HOM05D001702 ORTHO05D001791 1.7e-09 65.9 80 47.5
CiPaw.01G154500 Carya illinoinensis HOM05D001702 ORTHO05D001791 1.7e-09 65.9 90 43.3
Duzib151G0205 Durio zibethinus HOM05D001702 ORTHO05D001791 1.7e-09 65.9 46 58.7
PGR044G1762 Punica granatum HOM05D001702 ORTHO05D001791 1.7e-09 65.9 46 60.9
CAN.G223.1 Capsicum annuum HOM05D001702 ORTHO05D001791 2.3e-09 65.5 47 59.6
COL.COLO4_13942 Corchorus olitorius HOM05D001702 ORTHO05D001791 2.3e-09 65.5 46 56.5
Peaxi162Scf01067g00113 Petunia axillaris HOM05D001702 ORTHO05D001791 2.3e-09 65.5 47 57.4
CSS0015872 Camellia sinensis var. sinensis HOM05D001702 ORTHO05D001791 3.0e-09 65.1 47 57.4
Duzib212G0910 Durio zibethinus HOM05D001702 ORTHO05D001791 3.0e-09 65.1 46 58.7
Nitab4.5_0000303g0060 Nicotiana tabacum HOM05D001702 ORTHO05D001791 3.9e-09 64.7 83 45.8
Nitab4.5_0001149g0010 Nicotiana tabacum HOM05D001702 ORTHO05D001791 3.9e-09 64.7 83 45.8
Actinidia00057 Actinidia chinensis HOM05D001702 ORTHO05D001791 5.1e-09 64.3 47 55.3
CiPaw.02G087400 Carya illinoinensis HOM05D001702 ORTHO05D001791 5.1e-09 64.3 82 45.1
TAR636G2251 Trochodendron aralioides HOM05D001702 ORTHO05D001791 5.1e-09 64.3 46 60.9
Cpa.g.sc16.98 Carica papaya HOM05D001702 ORTHO05D001791 6.6e-09 63.9 82 47.6
DCAR_030572 Daucus carota HOM05D001702 ORTHO05D001791 6.6e-09 63.9 47 57.4
TPR.G32419 Trifolium pratense HOM05D001702 ORTHO05D001791 8.7e-09 63.5 46 58.7
GSVIVG01017822001 Vitis vinifera HOM05D001702 ORTHO05D001791 8.7e-09 63.5 46 58.7
Lalb_Chr16g0383431 Lupinus albus HOM05D001702 ORTHO05D001791 1.1e-08 63.2 46 60.9
Psat7g110440 Pisum sativum HOM05D001702 ORTHO05D001791 1.1e-08 63.2 46 56.5
RcHm_v2.0_Chr2g0117991 Rosa chinensis HOM05D001702 ORTHO05D001791 1.1e-08 63.2 82 48.8
VMungo0251G3363 Vigna mungo HOM05D001702 ORTHO05D001791 1.1e-08 63.2 46 58.7
VMungo1215G3068 Vigna mungo HOM05D001702 ORTHO05D001791 1.1e-08 63.2 46 58.7
CDE01G0446 Ceratophyllum demersum HOM05D001702 ORTHO05D001791 1.5e-08 62.8 80 46.2
Ca_00738_v3 Cicer arietinum L. HOM05D001702 ORTHO05D001791 1.5e-08 62.8 46 60.9
Glyma.01G082200 Glycine max HOM05D001702 ORTHO05D001791 1.5e-08 62.8 46 56.5
Phvul.002G227400 Phaseolus vulgaris HOM05D001702 ORTHO05D001791 1.5e-08 62.8 46 56.5
Phvul.003G035000 Phaseolus vulgaris HOM05D001702 ORTHO05D001791 1.5e-08 62.8 46 58.7
Prupe.6G166200 Prunus persica HOM05D001702 ORTHO05D001791 1.5e-08 62.8 46 60.9
Aa31LG5G16860 Aethionema arabicum HOM05D001702 ORTHO05D001791 1.9e-08 62.4 46 58.7
CsaV3_2G017780 Cucumis sativus L. HOM05D001702 ORTHO05D001791 1.9e-08 62.4 46 60.9
FvH4_1g23213 Fragaria vesca HOM05D001702 ORTHO05D001791 1.9e-08 62.4 82 48.8
FAN19G2654 Fragaria x ananassa HOM05D001702 ORTHO05D001791 1.9e-08 62.4 82 48.8
FAN26G2698 Fragaria x ananassa HOM05D001702 ORTHO05D009988 1.9e-08 62.4 82 48.8
Nitab4.5_0012848g0010 Nicotiana tabacum HOM05D001702 ORTHO05D001791 1.9e-08 62.4 83 43.4
Sed0013245 Sechium edule HOM05D001702 ORTHO05D001791 1.9e-08 62.4 46 60.9
Sed0027183 Sechium edule HOM05D001702 ORTHO05D001791 1.9e-08 62.4 43 69.8
Sc19g0004890 Simmondsia chinensis HOM05D001702 ORTHO05D001791 1.9e-08 62.4 80 46.2
Aqoxy5G00632 Aquilegia oxysepala HOM05D001702 ORTHO05D001791 2.5e-08 62.0 70 45.7
arahy.Tifrunner.gnm1.ann1.BB4STL Arachis hypogaea HOM05D001702 ORTHO05D001791 2.5e-08 62.0 46 58.7
MELO3C020969.2 Cucumis melo HOM05D001702 ORTHO05D001791 2.5e-08 62.0 46 60.9
FAN23G0666 Fragaria x ananassa HOM05D001702 ORTHO05D001791 2.5e-08 62.0 82 48.8
MD15G1335500 Malus domestica HOM05D001702 ORTHO05D001791 2.5e-08 62.0 46 60.9
Oeu029278.1 Olea europaea HOM05D001702 ORTHO05D001791 2.5e-08 62.0 44 68.2
vmacro15269 Vaccinium macrocarpon HOM05D001702 ORTHO05D001791 2.5e-08 62.0 47 53.2
AL3G17290 Arabidopsis lyrata HOM05D001702 ORTHO05D001791 3.3e-08 61.6 46 56.5
AT3G06350 Arabidopsis thaliana HOM05D001702 ORTHO05D001791 3.3e-08 61.6 46 56.5
Carub.0003s0579 Capsella rubella HOM05D001702 ORTHO05D001791 3.3e-08 61.6 43 60.5
MD00G1130500 Malus domestica HOM05D001702 ORTHO05D001791 3.3e-08 61.6 46 58.7
Nn3g21269 Nelumbo nucifera HOM05D001702 ORTHO05D001791 3.3e-08 61.6 68 45.6
Lj4g0022457 Lotus japonicus HOM05D001702 ORTHO05D001791 4.3e-08 61.2 46 60.9
Solyc01g067750.3 Solanum lycopersicum HOM05D001702 ORTHO05D001791 4.3e-08 61.2 47 57.4
Sopen01g029700 Solanum pennellii HOM05D001702 ORTHO05D001791 4.3e-08 61.2 47 57.4
CANSAT01G2117 Cannabis sativa HOM05D001702 ORTHO05D001791 5.6e-08 60.8 46 58.7
CARHR080870 Cardamine hirsuta HOM05D001702 ORTHO05D001791 5.6e-08 60.8 46 56.5
Thhalv10020322m.g Eutrema salsugineum HOM05D001702 ORTHO05D001791 5.6e-08 60.8 46 54.3
ClCG01G015850 Citrullus lanatus HOM05D001702 ORTHO05D001791 7.3e-08 60.5 67 46.3
ATR0706G261 Amborella trichopoda HOM05D001702 ORTHO05D001791 9.6e-08 60.1 79 43.0
arahy.Tifrunner.gnm1.ann1.UG7YIF Arachis hypogaea HOM05D001702 ORTHO05D001791 9.6e-08 60.1 46 60.9
FAN23G1116 Fragaria x ananassa HOM05D001702 ORTHO05D001791 9.6e-08 60.1 43 55.8
FAN28G1053 Fragaria x ananassa HOM05D001702 ORTHO05D009988 9.6e-08 60.1 43 55.8
MD15G1335600 Malus domestica HOM05D001702 ORTHO05D001791 9.6e-08 60.1 82 45.1
Medtr4g090620 Medicago truncatula HOM05D001702 ORTHO05D001791 9.6e-08 60.1 46 56.5
Actinidia32382 Actinidia chinensis HOM05D001702 ORTHO05D001791 1.2e-07 59.7 41 58.5
BcaB04g21329 Brassica carinata HOM05D001702 ORTHO05D001791 1.2e-07 59.7 46 54.3
A03p34650 Brassica napus HOM05D001702 ORTHO05D001791 1.2e-07 59.7 46 54.3
BNapus_Darmor_BZH_scaffold_118p00200 Brassica napus HOM05D001702 ORTHO05D001791 1.2e-07 59.7 46 54.3
BraA03t12642Z Brassica rapa HOM05D001702 ORTHO05D001791 1.2e-07 59.7 46 54.3
Prupe.6G166100 Prunus persica HOM05D001702 ORTHO05D001791 1.2e-07 59.7 46 58.7
RcHm_v2.0_Chr2g0118061 Rosa chinensis HOM05D001702 ORTHO05D001791 1.2e-07 59.7 43 58.1
THA.LOC104818839 Tarenaya hassleriana HOM05D001702 ORTHO05D001791 1.2e-07 59.7 46 54.3
MELO3C007451.2 Cucumis melo HOM05D001702 ORTHO05D001791 1.6e-07 59.3 67 46.3
Oeu010966.1 Olea europaea HOM05D001702 ORTHO05D001791 1.6e-07 59.3 42 66.7
Atru.chr2.604 Acer truncatum HOM05D001702 ORTHO05D001791 2.1e-07 58.9 46 56.5
C03p42120 Brassica napus HOM05D001702 ORTHO05D001791 2.1e-07 58.9 46 52.2
FvH4_1g23232 Fragaria vesca HOM05D001702 ORTHO05D001791 2.1e-07 58.9 43 55.8
TAR365G0277 Trochodendron aralioides HOM05D001702 ORTHO05D001791 2.1e-07 58.9 46 54.3
Zm00001eb410660 Zea mays HOM05D001702 ORTHO05D001791 2.1e-07 58.9 82 45.1
arahy.Tifrunner.gnm1.ann1.GRMH6R Arachis hypogaea HOM05D001702 ORTHO05D001791 2.8e-07 58.5 46 56.5
Glyma.20G230300 Glycine max HOM05D001702 ORTHO05D001791 2.8e-07 58.5 46 54.3
PSO478G0775 Papaver somniferum HOM05D001702 ORTHO05D001791 2.8e-07 58.5 68 44.1
Prupe.6G334000 Prunus persica HOM05D001702 ORTHO05D001791 2.8e-07 58.5 46 56.5
BcaB03g14673 Brassica carinata HOM05D001702 ORTHO05D001791 3.6e-07 58.2 46 52.2
BcaC09g47883 Brassica carinata HOM05D001702 ORTHO05D001791 3.6e-07 58.2 79 38.0
BcaC09g47885 Brassica carinata HOM05D001702 ORTHO05D001791 3.6e-07 58.2 79 38.0
A05p41690 Brassica napus HOM05D001702 ORTHO05D001791 3.6e-07 58.2 46 52.2
BolC1t05629H Brassica oleracea HOM05D001702 ORTHO05D001791 3.6e-07 58.2 79 38.0
BolC3t16492H Brassica oleracea HOM05D001702 ORTHO05D001791 3.6e-07 58.2 46 52.2
BraA01t04444Z Brassica rapa HOM05D001702 ORTHO05D001791 3.6e-07 58.2 79 38.0
BraA05t22888Z Brassica rapa HOM05D001702 ORTHO05D001791 3.6e-07 58.2 46 52.2
Thecc.05G250900 Theobroma cacao HOM05D001702 ORTHO05D001791 3.6e-07 58.2 46 56.5
ATR0706G046 Amborella trichopoda HOM05D001702 ORTHO05D001791 4.7e-07 57.8 46 54.3
BcaC05g29808 Brassica carinata HOM05D001702 ORTHO05D001791 4.7e-07 57.8 46 52.2
C05p60900 Brassica napus HOM05D001702 ORTHO05D001791 4.7e-07 57.8 46 52.2
BolC5t34746H Brassica oleracea HOM05D001702 ORTHO05D001791 4.7e-07 57.8 46 52.2
ClCG02G000920 Citrullus lanatus HOM05D001702 ORTHO05D001791 4.7e-07 57.8 46 58.7
COL.COLO4_36071 Corchorus olitorius HOM05D001702 ORTHO05D001791 4.7e-07 57.8 68 45.6
GSVIVG01021979001 Vitis vinifera HOM05D001702 ORTHO05D001791 4.7e-07 57.8 46 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2644 Anthoceros agrestis HOM05D001702 ORTHO05D001791 6.2e-07 57.4 49 49.0
CsaV3_6G042130 Cucumis sativus L. HOM05D001702 ORTHO05D001791 6.2e-07 57.4 67 44.8
Psat7g246840 Pisum sativum HOM05D001702 ORTHO05D001791 6.2e-07 57.4 46 58.7
Rhsim07G0177100 Rhododendron simsii HOM05D001702 ORTHO05D000914 6.2e-07 57.4 46 54.3
PSO782G3443 Papaver somniferum HOM05D001702 ORTHO05D001791 8.1e-07 57.0 68 42.6
AagrBONN_evm.TU.Sc2ySwM_228.1975 Anthoceros agrestis HOM05D001702 ORTHO05D001791 1.1e-06 56.6 67 43.3
CSS0042855 Camellia sinensis var. sinensis HOM05D001702 ORTHO05D001791 1.1e-06 56.6 46 52.2
Dinv01283 Davidia involucrata HOM05D001702 ORTHO05D001791 1.1e-06 56.6 46 54.3
Dinv03764 Davidia involucrata HOM05D001702 ORTHO05D001791 1.1e-06 56.6 46 54.3
Duzib128G0047 Durio zibethinus HOM05D001702 ORTHO05D001791 1.1e-06 56.6 46 56.5
Nn4g26055 Nelumbo nucifera HOM05D001702 ORTHO05D001791 1.1e-06 56.6 41 58.5
Phvul.007G183800 Phaseolus vulgaris HOM05D001702 ORTHO05D001791 1.1e-06 56.6 46 54.3
Potri.013G029800 Populus trichocarpa HOM05D001702 ORTHO05D001791 1.1e-06 56.6 46 56.5
Rhsim02G0014200 Rhododendron simsii HOM05D001702 ORTHO05D001791 1.1e-06 56.6 67 41.8
Sabra13G0029900 Salix brachista HOM05D001702 ORTHO05D001791 1.1e-06 56.6 76 42.1
Sp3g05260 Schrenkiella parvula HOM05D001702 ORTHO05D001791 1.1e-06 56.6 46 52.2
Gohir.A08G218500 Gossypium hirsutum HOM05D001702 ORTHO05D001791 1.4e-06 56.2 46 56.5
Gohir.D08G235700 Gossypium hirsutum HOM05D001702 ORTHO05D001791 1.8e-06 55.8 46 54.3
Gorai.004G250400 Gossypium raimondii HOM05D001702 ORTHO05D001791 1.8e-06 55.8 46 54.3
Manes.09G161200 Manihot esculenta HOM05D001702 ORTHO05D001791 1.8e-06 55.8 46 52.2
Sc09g0003580 Simmondsia chinensis HOM05D001702 ORTHO05D001791 1.8e-06 55.8 46 54.3
Lj3C811G14 Lonicera japonica HOM05D001702 ORTHO05D001791 2.4e-06 55.5 71 39.4
SEGI_18617 Sequoiadendron giganteum HOM05D001702 ORTHO05D001791 2.4e-06 55.5 78 38.5
Zm00001eb131900 Zea mays HOM05D001702 ORTHO05D001791 2.4e-06 55.5 78 42.3
VMungo0720G2005 Vigna mungo HOM05D001702 ORTHO05D001791 3.1e-06 55.1 46 54.3
HanXRQChr04g0117811 Helianthus annuus HOM05D001702 ORTHO05D001791 4.0e-06 54.7 68 39.7
PGSC0003DMG400025643 Solanum tuberosum HOM05D001702 ORTHO05D001791 4.0e-06 54.7 41 56.1
vmacro02509 Vaccinium macrocarpon HOM05D001702 ORTHO05D001791 4.0e-06 54.7 68 45.6
Zm00001eb137730 Zea mays HOM05D001702 ORTHO05D001791 4.0e-06 54.7 43 55.8
CAN.G1209.41 Capsicum annuum HOM05D001702 ORTHO05D001791 5.2e-06 54.3 68 41.2
ECA236G3441 Erigeron canadensis HOM05D001702 ORTHO05D001791 5.2e-06 54.3 68 42.6
Eucgr.H04428 Eucalyptus grandis HOM05D001702 ORTHO05D001791 5.2e-06 54.3 46 52.2
PSO675G3151 Papaver somniferum HOM05D001702 ORTHO05D001791 5.2e-06 54.3 46 47.8
PSO675G7253 Papaver somniferum HOM05D001702 ORTHO05D001791 5.2e-06 54.3 46 47.8
Peaxi162Scf01039g00134 Petunia axillaris HOM05D001702 ORTHO05D001791 5.2e-06 54.3 68 41.2
Potri.008G196100 Populus trichocarpa HOM05D001702 ORTHO05D001791 5.2e-06 54.3 46 54.3
Ah.05g169160 Amaranthus hybridus HOM05D001702 ORTHO05D003187 6.9e-06 53.9 46 47.8
Rhsim13G0017300 Rhododendron simsii HOM05D001702 ORTHO05D001791 6.9e-06 53.9 70 42.9
Solyc06g084460.4 Solanum lycopersicum HOM05D001702 ORTHO05D001791 6.9e-06 53.9 68 41.2
Sopen06g035850 Solanum pennellii HOM05D001702 ORTHO05D001791 6.9e-06 53.9 68 41.2
PGSC0003DMG402024041 Solanum tuberosum HOM05D001702 ORTHO05D001791 6.9e-06 53.9 68 41.2
CANSAT25G2405 Cannabis sativa HOM05D001702 ORTHO05D001791 9.0e-06 53.5 78 38.5
DCAR_002786 Daucus carota HOM05D001702 ORTHO05D003153 9.0e-06 53.5 47 46.8
DCAR_027114 Daucus carota HOM05D001702 ORTHO05D001791 9.0e-06 53.5 57 47.4
MD12G1228800 Malus domestica HOM05D001702 ORTHO05D001791 9.0e-06 53.5 46 56.5
QL03p002791 Quercus lobata HOM05D001702 ORTHO05D001791 9.0e-06 53.5 46 56.5
SEGI_31596 Sequoiadendron giganteum HOM05D001702 ORTHO05D001791 9.0e-06 53.5 68 39.7


User provided reference genes

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