Gene: Carub.0003s0579
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0003s0579
- Transcript Identifier Carub.0003s0579.1
- Gene Type Coding gene
- Location scaffold_3 : 1965212-1968279 : negative
Gene Family Information
- ID HOM05D001702
- #Genes/#Species 381/98
- Phylogenetic origin
- ID ORTHO05D001791
- #Genes/#Species 355/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Carub.0003s0579.v1.1
- pacid 39239991
- synonym Carubv10013287m.g
Descriptions
- Description PTHR21089:SF1 - BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019632 | IEA | InterPro | shikimate metabolic process | |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT3G06350 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004764 | IEA | InterPro | shikimate 3-dehydrogenase (NADP+) activity | |
| GO:0050661 | IEA | InterPro | NADP binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0003855 | IEA | InterPro | 3-dehydroquinate dehydratase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT3G06350 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G06350 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013708 | Shikimate dehydrogenase substrate binding, N-terminal |
| IPR011342 | Shikimate dehydrogenase |
| IPR013785 | Aldolase-type TIM barrel |
| IPR001381 | 3-dehydroquinate dehydratase type I |
| IPR006151 | Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase |
| IPR041121 | SDH, C-terminal |
| IPR036291 | NAD(P)-binding domain superfamily |
| IPR022893 | Shikimate dehydrogenase family |
| Mapman id | Description |
|---|---|
| 4.1.5.1.3 | Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate dehydratase and shikimate dehydrogenase |