Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 0.0e+00 1782.3 908 100.0
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 0.0e+00 1214.9 931 70.6
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 9.5e-295 1016.9 931 62.8
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 3.0e-280 968.8 979 57.3
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 1.5e-268 929.9 1002 53.9
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 3.8e-267 925.2 1002 54.0
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.4e-266 923.3 1008 53.3
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 5.1e-264 914.8 856 59.7
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.9e-263 912.9 991 54.8
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 1.6e-262 909.8 866 58.4
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 3.6e-262 908.7 952 55.1
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 6.9e-261 904.4 983 53.7
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 2.6e-260 902.5 939 55.5
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.7e-259 899.8 939 55.4
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 6.4e-259 897.9 1064 50.4
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 8.4e-259 897.5 945 55.3
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 3.9e-256 888.6 962 54.0
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 3.9e-256 888.6 916 56.2
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 3.3e-255 885.6 979 53.4
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 4.3e-255 885.2 985 53.2
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 2.1e-254 882.9 953 54.5
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 1.8e-253 879.8 982 53.5
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 1.5e-252 876.7 914 55.6
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 1.9e-250 869.8 994 51.7
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 2.5e-250 869.4 975 52.1
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.3e-248 863.6 1012 51.1
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 2.3e-248 862.8 1006 51.9
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.1e-247 860.5 1009 51.4
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 6.3e-246 854.7 987 51.7
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 3.1e-245 852.4 985 51.1
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 4.5e-244 848.6 972 52.0
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 1.0e-243 847.4 974 51.4
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 1.1e-242 844.0 954 51.9
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 2.5e-242 842.8 935 52.7
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 5.5e-242 841.6 1003 50.3
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 6.1e-241 838.2 987 50.6
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 4.8e-238 828.6 948 51.6
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 6.9e-237 824.7 997 49.7
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 4.5e-236 822.0 956 51.5
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 1.0e-235 820.8 944 50.6
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 5.0e-235 818.5 862 53.9
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.4e-234 817.0 946 51.4
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 3.6e-233 812.4 846 55.3
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 7.9e-233 811.2 935 51.3
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.0e-232 810.8 854 52.9
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 5.1e-232 808.5 910 52.5
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 1.5e-231 807.0 959 51.1
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.0e-231 806.6 901 51.5
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 1.3e-230 803.9 937 50.7
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.3e-230 803.9 924 51.0
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 6.3e-230 801.6 962 50.6
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 8.2e-230 801.2 884 51.7
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.1e-229 800.8 993 49.9
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 3.1e-229 799.3 984 50.3
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 5.3e-229 798.5 891 52.2
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 5.3e-229 798.5 940 51.2
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.7e-227 793.5 941 49.9
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 6.5e-227 791.6 845 52.4
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 5.5e-226 788.5 929 50.1
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 5.1e-224 781.9 964 49.6
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 5.1e-224 781.9 942 50.2
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 2.0e-223 780.0 956 49.7
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 9.7e-223 777.7 894 49.7
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 2.8e-222 776.2 916 50.5
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 3.7e-222 775.8 894 50.4
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 4.1e-221 772.3 940 49.8
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.3e-219 767.3 901 49.4
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.7e-219 766.9 975 48.8
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.2e-219 766.5 823 53.5
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.1e-218 764.2 910 49.7
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.2e-218 762.7 742 58.1
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.7e-217 758.8 993 47.5
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 4.0e-216 755.7 950 49.2
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 4.0e-216 755.7 908 49.6
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 2.0e-215 753.4 881 50.2
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 5.7e-215 751.9 936 47.9
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 1.1e-213 747.7 892 50.2
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 9.1e-213 744.6 834 52.5
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.6e-212 743.8 959 47.2
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 2.7e-212 743.0 954 47.0
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 3.5e-212 742.7 999 46.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 7.7e-212 741.5 886 49.8
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 1.6e-209 733.8 921 47.8
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 1.0e-208 731.1 720 56.7
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 1.0e-208 731.1 906 47.1
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.8e-208 730.3 929 48.0
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 2.0e-207 726.9 902 48.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 8.3e-206 721.5 910 47.9
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 4.2e-202 709.1 822 49.4
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.6e-201 707.2 937 47.0
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 2.2e-198 696.8 868 46.2
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 3.3e-194 682.9 886 45.9
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 4.7e-193 679.1 990 42.8
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 1.2e-191 674.5 679 54.6
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 4.3e-186 656.0 848 47.4
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 8.3e-182 641.7 709 52.5
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.2e-177 627.9 667 52.8
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.9e-173 614.0 615 54.5
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 3.3e-170 603.2 1004 41.0
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 1.3e-163 581.3 715 48.1
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 4.0e-160 569.7 682 51.6
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 6.9e-152 542.3 893 40.0
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.9e-150 537.0 911 39.5
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 9.3e-149 531.9 1014 36.1
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 3.8e-142 510.0 1109 34.6
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 9.6e-138 495.4 870 37.2
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.3e-110 405.2 486 47.9
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 7.0e-104 382.9 1111 28.8
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 3.4e-90 337.4 379 51.5
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 6.4e-57 226.9 886 27.4
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 1.1e-51 209.5 382 35.3
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 2.2e-49 201.8 852 23.6
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 1.3e-46 192.6 285 47.0
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 6.2e-44 183.7 369 31.4
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.0e-30 139.8 175 47.4
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.9e-29 135.6 293 31.1
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.3e-25 122.9 460 25.7
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 9.0e-19 100.1 198 38.4
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.0e-18 99.0 145 31.7
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.3e-13 81.6 177 38.4
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 9.7e-13 80.1 108 44.4
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 1.6e-12 79.3 85 49.4
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 6.7e-06 57.4 113 32.7


User provided reference genes

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