Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0443961 Helianthus annuus HOM05D003868 ORTHO05D020386 4.1e-37 157.5 79 100.0
Hund04404 Selenicereus undatus HOM05D003868 ORTHO05D005364 1.8e-16 89.0 50 88.0
Cpa.g.sc48.229 Carica papaya HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
COL.COLO4_28215 Corchorus olitorius HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
Duzib128G0320 Durio zibethinus HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
Eucgr.H01340 Eucalyptus grandis HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
HanXRQChr04g0116761 Helianthus annuus HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
Potri.013G000700 Populus trichocarpa HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
Prupe.6G302900 Prunus persica HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
PGR083G0274 Punica granatum HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
Rhsim05G0124800 Rhododendron simsii HOM05D003868 ORTHO05D005364 3.1e-16 88.2 46 93.5
Sabra13G0000600 Salix brachista HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
Sed0020210 Sechium edule HOM05D003868 ORTHO05D005364 3.1e-16 88.2 49 89.8
Haze_15009 Corylus avellana HOM05D003868 ORTHO05D005364 5.3e-16 87.4 45 95.6
Nn4g25324 Nelumbo nucifera HOM05D003868 ORTHO05D005364 5.3e-16 87.4 49 85.7
Atru.chr12.1514 Acer truncatum HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
Aa31LG11G9990 Aethionema arabicum HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
ClCG03G017940 Citrullus lanatus HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
Ciclev10028527m.g Citrus clementina HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
MELO3C015225.2 Cucumis melo HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
CsaV3_1G038240 Cucumis sativus L. HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
DCAR_029304 Daucus carota HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
ECA236G4503 Erigeron canadensis HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
FvH4_6g08670 Fragaria vesca HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
FAN02G3718 Fragaria x ananassa HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
FAN05G2124 Fragaria x ananassa HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
FAN09G4770 Fragaria x ananassa HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
Lsat_1_v5_gn_7_23500 Lactuca sativa HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
MD04G1184400 Malus domestica HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
RcHm_v2.0_Chr3g0458811 Rosa chinensis HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
SalBow1G5269 Salvia bowleyana HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
SalBow1G5332 Salvia bowleyana HOM05D003868 ORTHO05D005364 6.9e-16 87.0 49 87.8
Actinidia11698 Actinidia chinensis HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
AL6G38510 Arabidopsis lyrata HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
AT5G26680 Arabidopsis thaliana HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
A06p36880 Brassica napus HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
C07p41620 Brassica napus HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
BolC7t44696H Brassica oleracea HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
BraA06t26613Z Brassica rapa HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
Carub.0006s2428 Capsella rubella HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
CARHR186910 Cardamine hirsuta HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
Thhalv10004386m.g Eutrema salsugineum HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
Sp2g21320 Schrenkiella parvula HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 85.7
Thecc.05G330900 Theobroma cacao HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 87.8
TWI56G0733 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 87.8
GSVIVG01031344001 Vitis vinifera HOM05D003868 ORTHO05D005364 9.0e-16 86.7 49 87.8
CAN.G1248.3 Capsicum annuum HOM05D003868 ORTHO05D005364 1.2e-15 86.3 48 89.6
Glyma.10G141800 Glycine max HOM05D003868 ORTHO05D005364 1.2e-15 86.3 49 87.8
Glyma.20G090300 Glycine max HOM05D003868 ORTHO05D005364 1.2e-15 86.3 49 87.8
Medtr1g085130 Medicago truncatula HOM05D003868 ORTHO05D005364 1.2e-15 86.3 59 74.6
Nitab4.5_0000541g0020 Nicotiana tabacum HOM05D003868 ORTHO05D005364 1.2e-15 86.3 48 89.6
Nitab4.5_0003511g0030 Nicotiana tabacum HOM05D003868 ORTHO05D005364 1.2e-15 86.3 48 89.6
Peaxi162Scf00194g00323 Petunia axillaris HOM05D003868 ORTHO05D005364 1.2e-15 86.3 48 89.6
SMO201G0085 Selaginella moellendorffii HOM05D003868 ORTHO05D005364 1.2e-15 86.3 49 83.7
Solyc01g102370.4 Solanum lycopersicum HOM05D003868 ORTHO05D005364 1.2e-15 86.3 48 89.6
Sopen01g044820 Solanum pennellii HOM05D003868 ORTHO05D005364 1.2e-15 86.3 48 89.6
SGA_v2.0_scaffold464G51994 Striga asiatica HOM05D003868 ORTHO05D005364 1.2e-15 86.3 50 84.0
MSTRG.20351 Avicennia marina HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 85.7
CiPaw.02G000700 Carya illinoinensis HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 87.8
Ca_10214_v3 Cicer arietinum L. HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 85.7
Manes.08G106600 Manihot esculenta HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 87.8
Manes.09G182200 Manihot esculenta HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 87.8
PSO170G4013 Papaver somniferum HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 85.7
PSO357G0419 Papaver somniferum HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 85.7
Phvul.007G206500 Phaseolus vulgaris HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 85.7
QL03p011251 Quercus lobata HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 85.7
TPR.G34902 Trifolium pratense HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 85.7
TWI12G0833 Tripterygium wilfordii HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 87.8
VMungo0720G2099 Vigna mungo HOM05D003868 ORTHO05D005364 1.5e-15 85.9 49 85.7
Dinv30957 Davidia involucrata HOM05D003868 ORTHO05D005364 2.0e-15 85.5 49 85.7
Migut.K00044 Erythranthe guttata HOM05D003868 ORTHO05D005364 2.6e-15 85.1 49 85.7
SHI18007 Sapria himalayana HOM05D003868 ORTHO05D005364 2.6e-15 85.1 49 85.7
TAR362G1038 Trochodendron aralioides HOM05D003868 ORTHO05D005364 2.6e-15 85.1 49 85.7
TAR629G1113 Trochodendron aralioides HOM05D003868 ORTHO05D005364 2.6e-15 85.1 49 85.7
Aqoxy5G02863 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 3.4e-15 84.7 49 85.7
AUR62003554 Chenopodium quinoa HOM05D003868 ORTHO05D005364 4.5e-15 84.3 50 84.0
AUR62017868 Chenopodium quinoa HOM05D003868 ORTHO05D005364 4.5e-15 84.3 50 84.0
Cc02_g36030 Coffea canephora HOM05D003868 ORTHO05D005364 4.5e-15 84.3 48 87.5
Gohir.D07G145601 Gossypium hirsutum HOM05D003868 ORTHO05D020386 4.5e-15 84.3 48 87.5
Gorai.001G157600 Gossypium raimondii HOM05D003868 ORTHO05D020386 4.5e-15 84.3 48 87.5
Lj5C315T22 Lonicera japonica HOM05D003868 ORTHO05D005364 4.5e-15 84.3 49 83.7
Lalb_Chr02g0147421 Lupinus albus HOM05D003868 ORTHO05D005364 4.5e-15 84.3 48 87.5
THA.LOC104818763 Tarenaya hassleriana HOM05D003868 ORTHO05D005364 4.5e-15 84.3 49 85.7
arahy.Tifrunner.gnm1.ann1.936SG4 Arachis hypogaea HOM05D003868 ORTHO05D005364 5.8e-15 84.0 49 85.7
arahy.Tifrunner.gnm1.ann1.XTWP4U Arachis hypogaea HOM05D003868 ORTHO05D005364 5.8e-15 84.0 49 85.7
CDE09G0469 Ceratophyllum demersum HOM05D003868 ORTHO05D020386 5.8e-15 84.0 49 81.6
CDE09G0829 Ceratophyllum demersum HOM05D003868 ORTHO05D005364 5.8e-15 84.0 49 81.6
Gohir.A10G176900 Gossypium hirsutum HOM05D003868 ORTHO05D005364 5.8e-15 84.0 49 85.7
Gohir.D10G183600 Gossypium hirsutum HOM05D003868 ORTHO05D005364 5.8e-15 84.0 49 85.7
Gorai.011G205800 Gossypium raimondii HOM05D003868 ORTHO05D005364 5.8e-15 84.0 49 85.7
Psat6g156480 Pisum sativum HOM05D003868 ORTHO05D005364 5.8e-15 84.0 49 83.7
Eucgr.B01329 Eucalyptus grandis HOM05D003868 ORTHO05D005364 7.6e-15 83.6 49 81.6
MBI18_g03859_MAGBIO Magnolia biondii HOM05D003868 ORTHO05D005364 7.6e-15 83.6 49 85.7
TAR633G2595 Trochodendron aralioides HOM05D003868 ORTHO05D005364 7.6e-15 83.6 45 91.1
CSS0017748 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 9.9e-15 83.2 49 83.7
Eucgr.B01328 Eucalyptus grandis HOM05D003868 ORTHO05D005364 9.9e-15 83.2 49 81.6
Eucgr.B01342 Eucalyptus grandis HOM05D003868 ORTHO05D005364 9.9e-15 83.2 46 84.8
Os05g0540100 Oryza sativa ssp. japonica HOM05D003868 ORTHO05D005364 9.9e-15 83.2 49 83.7
EL10Ac6g15321 Beta vulgaris HOM05D003868 ORTHO05D005364 2.2e-14 82.0 49 81.6
Eucgr.B01348 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.2e-14 82.0 49 79.6
Lj5g0001875 Lotus japonicus HOM05D003868 ORTHO05D005364 2.2e-14 82.0 49 83.7
Pp3c2_30860 Physcomitrium patens HOM05D003868 ORTHO05D005364 2.2e-14 82.0 48 81.2
HPP92_017212 Vanilla planifolia HOM05D003868 ORTHO05D005364 2.2e-14 82.0 49 81.6
Zm00001eb294290 Zea mays HOM05D003868 ORTHO05D005364 2.2e-14 82.0 49 81.6
Gohir.D13G117100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 2.9e-14 81.6 49 83.7
Gorai.013G131700 Gossypium raimondii HOM05D003868 ORTHO05D005364 2.9e-14 81.6 49 83.7
Lalb_Chr06g0167231 Lupinus albus HOM05D003868 ORTHO05D005364 2.9e-14 81.6 49 83.7
Pp3c11_1310 Physcomitrium patens HOM05D003868 ORTHO05D005364 2.9e-14 81.6 49 79.6
Eucgr.B01339 Eucalyptus grandis HOM05D003868 ORTHO05D005364 3.8e-14 81.3 49 79.6
vmacro19799 Vaccinium macrocarpon HOM05D003868 ORTHO05D005364 3.8e-14 81.3 59 74.6
ATR0693G183 Amborella trichopoda HOM05D003868 ORTHO05D005364 4.9e-14 80.9 49 79.6
CSS0027931 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 4.9e-14 80.9 59 71.2
CSS0029807 Camellia sinensis var. sinensis HOM05D003868 ORTHO05D005364 4.9e-14 80.9 59 71.2
Eucgr.B01331 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.9e-14 80.9 49 77.6
Eucgr.B01341 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.9e-14 80.9 49 79.6
Eucgr.B01344 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.9e-14 80.9 49 77.6
Eucgr.J01445 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.9e-14 80.9 49 79.6
Gohir.D04G090400 Gossypium hirsutum HOM05D003868 ORTHO05D020386 4.9e-14 80.9 48 83.3
Gorai.006G067700 Gossypium raimondii HOM05D003868 ORTHO05D020386 4.9e-14 80.9 48 85.4
AagrBONN_evm.TU.Sc2ySwM_344.2826 Anthoceros agrestis HOM05D003868 ORTHO05D005364 6.4e-14 80.5 49 77.6
MSTRG.5173 Avicennia marina HOM05D003868 ORTHO05D005364 6.4e-14 80.5 49 79.6
PGR031G0514 Punica granatum HOM05D003868 ORTHO05D005364 6.4e-14 80.5 49 81.6
Eucgr.B01335 Eucalyptus grandis HOM05D003868 ORTHO05D005364 8.4e-14 80.1 49 79.6
Gohir.A13G114100 Gossypium hirsutum HOM05D003868 ORTHO05D005364 8.4e-14 80.1 49 81.6
SalBow4G0333 Salvia bowleyana HOM05D003868 ORTHO05D005364 8.4e-14 80.1 49 81.6
SEGI_17973 Sequoiadendron giganteum HOM05D003868 ORTHO05D005364 1.1e-13 79.7 49 79.6
Mapoly0083s0081 Marchantia polymorpha HOM05D003868 ORTHO05D005364 1.4e-13 79.3 49 77.6
SGA_v2.0_scaffold5G02926 Striga asiatica HOM05D003868 ORTHO05D005364 1.9e-13 79.0 49 77.6
Gorai.007G242800 Gossypium raimondii HOM05D003868 ORTHO05D001188 2.4e-13 78.6 65 63.1
Sc07g0001850 Simmondsia chinensis HOM05D003868 ORTHO05D005364 3.2e-13 78.2 49 79.6
CBR_g39652 Chara braunii HOM05D003868 ORTHO05D005364 7.1e-13 77.0 49 75.5
Gohir.D04G082216 Gossypium hirsutum HOM05D003868 ORTHO05D020386 7.1e-13 77.0 49 79.6
Eucgr.B01835 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.2e-12 76.3 49 75.5
Eucgr.B01326 Eucalyptus grandis HOM05D003868 ORTHO05D005364 4.6e-12 74.3 49 73.5
Aqoxy2G02412 Aquilegia oxysepala HOM05D003868 ORTHO05D005364 1.8e-11 72.4 49 71.4
PSO761G0576 Papaver somniferum HOM05D003868 ORTHO05D005364 2.3e-11 72.0 48 75.0
MCO07G337 Micromonas commoda HOM05D003868 ORTHO05D005364 5.1e-11 70.9 49 67.3
PRCOL_00001649 Prasinoderma coloniale HOM05D003868 ORTHO05D005364 5.1e-11 70.9 45 68.9
HanXRQChr15g0484431 Helianthus annuus HOM05D000620 ORTHO05D000537 8.7e-11 70.1 45 73.3
Cre03.g145687 Chlamydomonas reinhardtii HOM05D003868 ORTHO05D005364 1.1e-10 69.7 49 61.2
PSO210G0203 Papaver somniferum HOM05D003868 ORTHO05D005364 1.1e-10 69.7 48 72.9
BcaB04g19723 Brassica carinata HOM05D003868 ORTHO05D005364 2.5e-10 68.6 40 82.5
Eucgr.B01336 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.5e-10 68.6 49 71.4
HPP92_017311 Vanilla planifolia HOM05D003868 ORTHO05D005364 4.3e-10 67.8 46 73.9
Migut.N00980 Erythranthe guttata HOM05D003868 ORTHO05D005364 5.6e-10 67.4 50 70.0
Eucgr.B01346 Eucalyptus grandis HOM05D003868 ORTHO05D005364 1.6e-09 65.9 40 75.0
Zm00001eb211370 Zea mays HOM05D003868 ORTHO05D005364 4.8e-09 64.3 48 62.5
Os03g0834000 Oryza sativa ssp. japonica HOM05D003868 ORTHO05D005364 6.2e-09 63.9 46 67.4
PSO210G1262 Papaver somniferum HOM05D003868 ORTHO05D005364 4.0e-08 61.2 48 64.6
Eucgr.B01834 Eucalyptus grandis HOM05D003868 ORTHO05D005364 2.0e-07 58.9 42 71.4
Haze_27230 Corylus avellana HOM05D003868 ORTHO05D005364 8.4e-06 53.5 45 51.1


User provided reference genes

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