Gene: Sopen01g044820

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g044820
  • Transcript Identifier Sopen01g044820.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 101706649-101714498 : positive

Gene Family Information

  • ID HOM05D003868
  • #Genes/#Species 180/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g044820.1

Descriptions

  • Description 5-3 exonuclease family protein | FUNCTIONS IN: 5-3 exonuclease activity, DNA binding, catalytic activity, nuclease activity | INVOLVED IN: DNA repair | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 9 growth stages | CONTAINS InterPro DOMAIN/s: XPG conserved site , XPG N-terminal , DNA repair protein (XPGC)/yeast Rad , 5-3 exonuclease, N-terminal , 5-3 exonuclease, C-terminal subdomain , Helix-hairpin-helix motif, class 2 , XPG/RAD2 endonuclease | BEST Arabidopsis thaliana protein match is: 5-3 exonuclease family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009411
ISO
PLAZA Integrative Orthologyresponse to UV AT5G26680

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0004518
IEA
InterPronuclease activity
GO:0003824
IEA
InterProcatalytic activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os05g0540100
GO:0048256
ISO
PLAZA Integrative Orthologyflap endonuclease activity AT5G26680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G26680
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus Os05g0540100

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036279 5'-3' exonuclease, C-terminal domain superfamily
IPR002421 5'-3' exonuclease
IPR006086 XPG-I domain
IPR029060 PIN-like domain superfamily
IPR006085 XPG, N-terminal
IPR006084 XPG/Rad2 endonuclease
IPR008918 Helix-hairpin-helix motif, class 2
Mapman id Description
13.2.4.2 Cell cycle organisation.DNA replication.maturation.flap structure-specific endonuclease (FEN1)
14.5.8 DNA damage response.base excision repair (BER).flap structure-specific endonuclease (FEN1)