Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 3.6e-219 764.6 379 100.0
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 7.7e-206 720.3 389 93.3
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 7.7e-206 720.3 389 93.3
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 7.7e-206 720.3 389 93.3
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 1.8e-191 672.5 389 87.7
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.5e-145 520.0 259 98.8
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 2.0e-145 519.6 396 70.7
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.9e-144 515.8 398 69.1
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-143 513.8 398 69.1
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 3.4e-137 492.3 397 67.8
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.2e-134 483.8 400 65.0
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.2e-129 467.2 402 62.9
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 5.4e-127 458.4 400 65.0
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 9.0e-122 441.0 400 62.0
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 7.6e-121 438.0 405 61.7
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 1.0e-117 427.6 401 60.6
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.3e-116 422.5 397 62.0
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.3e-116 422.2 398 61.8
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.3e-116 422.2 398 61.8
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.3e-116 422.2 398 61.8
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.3e-116 422.2 398 61.8
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.3e-116 422.2 398 61.8
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.4e-114 416.4 397 58.4
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 5.8e-113 411.8 400 59.0
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 4.9e-112 408.7 400 58.8
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 4.9e-112 408.7 400 58.8
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-111 407.5 398 60.8
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.2e-110 404.1 400 60.0
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 3.0e-109 399.4 398 56.3
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.7e-109 398.3 396 60.1
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.1e-108 397.5 401 57.6
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.3e-107 394.0 400 58.2
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 1.8e-106 390.2 402 57.5
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 4.1e-106 389.0 405 57.0
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-103 380.9 394 57.6
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.6e-102 377.1 371 59.0
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.7e-102 376.3 373 60.3
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.8e-101 373.6 370 59.2
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.8e-101 373.6 370 59.2
MSTRG.17791 Avicennia marina HOM05D000216 ORTHO05D000634 8.8e-101 371.3 333 64.9
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 9.7e-100 367.9 390 56.7
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 2.7e-94 349.7 388 54.4
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.1e-94 348.6 333 60.4
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 5.7e-92 342.0 396 53.0
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 2.4e-90 336.7 393 52.7
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.4e-85 320.9 315 61.6
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.8e-82 310.5 260 65.8
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.8e-82 310.5 260 65.8
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.8e-82 310.5 260 65.8
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.8e-82 310.5 260 65.8
HanXRQChr14g0455001 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-78 297.7 157 94.9
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.4e-77 294.3 392 50.0
HanXRQChr00c0313g0573471 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-76 291.2 148 98.0
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 6.8e-69 265.4 290 55.2
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 1.5e-68 264.2 290 54.8
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 1.5e-68 264.2 290 54.8
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 1.5e-68 264.2 290 54.8
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 2.5e-63 246.9 379 44.6
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 2.4e-58 230.3 289 49.5
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.3e-55 218.8 227 55.9
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.1e-54 217.2 261 51.0
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.5e-52 208.8 261 48.7
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 3.5e-49 199.9 172 66.9
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 7.8e-49 198.7 203 56.7
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 1.3e-48 198.0 127 74.8
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 2.3e-48 197.2 147 68.0
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 1.1e-47 194.9 125 76.0
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.5e-47 194.5 166 66.9
Hund31462 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.3e-47 192.2 242 52.1
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 2.1e-46 190.7 90 98.9
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 8.9e-45 185.3 307 40.7
Zm00001eb434960 Zea mays HOM05D000216 ORTHO05D000634 9.8e-44 181.8 194 56.2
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.9e-43 180.3 182 58.2
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.9e-43 180.3 182 58.2
Zm00001eb271610 Zea mays HOM05D000216 ORTHO05D000634 4.9e-43 179.5 241 49.4
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 6.4e-43 179.1 129 67.4
Hund04024 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.9e-42 177.6 282 44.7
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-42 176.8 125 71.2
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 7.0e-42 175.6 328 39.6
Solyc01g056330.2 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.6e-41 174.5 122 73.0
BraSC140t45608Z Brassica rapa HOM05D000216 ORTHO05D000634 2.1e-41 174.1 182 57.7
MELO3C000330.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.9e-40 169.9 178 57.3
BraSC143t45681Z Brassica rapa HOM05D000216 ORTHO05D000634 1.9e-39 167.5 165 57.6
HanXRQChr03g0073111 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-39 167.2 85 96.5
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-33 147.5 240 42.9
HanXRQChr10g0282531 Helianthus annuus HOM05D000216 ORTHO05D000634 2.7e-33 147.1 73 100.0
Potri.019G027720 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.3e-32 144.8 124 65.3
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 8.6e-32 142.1 155 56.1
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 1.9e-31 141.0 172 46.5
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 1.4e-29 134.8 155 51.6
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 4.0e-29 133.3 202 46.0
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.9e-29 132.1 165 52.1
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 2.9e-27 127.1 135 53.3
Zm00001eb226410 Zea mays HOM05D000216 ORTHO05D000634 7.8e-25 119.0 125 56.0
ClCG07G007330 Citrullus lanatus HOM05D000216 ORTHO05D000634 1.6e-22 111.3 156 48.7
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.1e-22 110.9 82 64.6
Migut.G01245 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.8e-22 110.5 88 69.3
Peaxi162Scf00348g01211 Petunia axillaris HOM05D000216 ORTHO05D000634 2.8e-22 110.5 87 64.4
Hund07969 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.4e-21 108.2 144 48.6
Lalb_Chr06g0173011 Lupinus albus HOM05D000216 ORTHO05D000634 5.3e-21 106.3 83 71.1
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 2.9e-19 100.5 116 51.7
Lj2C1237G1 Lonicera japonica HOM05D000216 ORTHO05D000634 3.8e-19 100.1 85 61.2
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 3.9e-16 90.1 50 76.0
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 3.9e-16 90.1 50 76.0
TPR.G2741 Trifolium pratense HOM05D000216 ORTHO05D000634 6.6e-16 89.4 138 44.9
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-15 88.6 50 74.0
Solyc08g028920.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-15 87.8 129 45.0
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.3e-14 85.1 50 76.0
ClCG01G011270 Citrullus lanatus HOM05D000216 ORTHO05D000634 2.1e-14 84.3 137 44.5
Nn4g23967 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.1e-14 84.3 55 74.5
Aa31csc39G140 Aethionema arabicum HOM05D000216 ORTHO05D000634 2.8e-14 84.0 65 60.0
BraSC151t45695Z Brassica rapa HOM05D000216 ORTHO05D000634 1.1e-13 82.0 82 54.9
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 1.1e-13 82.0 50 70.0
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.4e-13 80.9 64 70.3
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 2.0e-12 77.8 196 36.7
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 2.6e-12 77.4 50 64.0
Aa31csc39G130 Aethionema arabicum HOM05D000216 ORTHO05D000634 3.4e-12 77.0 171 33.9
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 4.5e-12 76.6 55 67.3
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 4.5e-12 76.6 50 64.0
Nitab4.5_0000172g0280 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.7e-11 74.7 76 51.3
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 2.9e-11 73.9 50 64.0
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 2.9e-11 73.9 50 64.0
Medtr3g450720 Medicago truncatula HOM05D000216 ORTHO05D000634 2.4e-10 70.9 152 36.8
Zm00001eb435750 Zea mays HOM05D000216 ORTHO05D000634 9.3e-10 68.9 68 55.9
Zm00001eb437130 Zea mays HOM05D000216 ORTHO05D000634 9.3e-10 68.9 68 55.9
Zm00001eb437780 Zea mays HOM05D000216 ORTHO05D000634 9.3e-10 68.9 68 55.9
Zm00001eb438310 Zea mays HOM05D000216 ORTHO05D000634 9.3e-10 68.9 68 55.9
arahy.Tifrunner.gnm1.ann1.RVT61B Arachis hypogaea HOM05D000216 ORTHO05D000634 1.6e-09 68.2 198 33.3
HanXRQChr00c0300g0573171 Helianthus annuus HOM05D000216 ORTHO05D000634 1.0e-08 65.5 35 91.4
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 5.1e-08 63.2 61 47.5
Lalb_Chr23g0274581 Lupinus albus HOM05D000216 ORTHO05D000634 1.1e-07 62.0 72 50.0
arahy.Tifrunner.gnm1.ann1.VLT00F Arachis hypogaea HOM05D001966 ORTHO05D011119 3.3e-07 60.5 54 61.1
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.4e-07 59.3 40 67.5
Solyc06g074600.2 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.6e-06 58.2 37 75.7
GSVIVG01030958001 Vitis vinifera HOM05D000216 ORTHO05D000634 6.2e-06 56.2 28 78.6


User provided reference genes

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