Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1509.2 736 100.0
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1264.6 646 94.0
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1256.9 679 91.0
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1237.6 645 92.4
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1213.4 648 90.3
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1205.3 648 88.7
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1198.7 649 88.6
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1196.4 648 88.7
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1195.3 649 89.1
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1192.9 649 88.4
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 649 88.1
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1191.0 645 88.5
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1188.3 651 88.3
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1187.6 648 86.7
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1186.0 645 87.8
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1183.3 646 87.8
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 643 88.0
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1182.5 645 87.3
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 650 86.0
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 646 86.8
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 648 87.7
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 646 87.6
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 657 85.7
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 651 86.6
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 649 87.5
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 645 87.1
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 645 86.7
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 648 86.9
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1179.5 650 87.1
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 650 86.9
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 650 86.6
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 645 86.7
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1177.9 648 87.0
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 645 87.0
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 648 86.7
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 649 86.6
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1174.8 648 86.3
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 648 86.1
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1174.1 646 86.7
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 644 86.5
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1172.9 647 86.4
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 648 87.5
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 645 87.6
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1170.6 649 86.6
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1170.2 658 84.5
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 645 86.5
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 648 86.0
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1168.3 648 85.5
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 649 86.0
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1167.5 650 86.5
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 646 85.8
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1167.1 649 86.0
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 647 85.9
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 658 85.1
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1166.0 647 86.4
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 644 86.6
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 644 86.6
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 647 86.2
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1164.1 647 86.2
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 648 85.5
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 642 87.1
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 649 86.0
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1160.6 640 87.3
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1160.2 649 85.7
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 652 85.3
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1156.4 652 85.3
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 653 85.1
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 648 85.2
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 665 83.6
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 652 85.0
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 649 85.7
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 652 84.8
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1153.7 651 86.3
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1152.9 648 85.5
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1152.1 648 85.3
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 642 86.1
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 652 84.5
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 661 84.0
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1150.6 645 86.0
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 648 86.3
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1149.4 650 84.8
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 646 84.4
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 650 85.2
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1147.5 714 78.7
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 636 86.3
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1145.6 636 86.3
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1143.6 647 84.2
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1142.5 636 86.2
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 655 83.5
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1141.3 648 84.7
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1141.3 649 84.7
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1140.9 636 86.0
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 636 85.8
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 593 91.2
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 664 81.8
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1130.2 647 84.9
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1118.6 641 83.3
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1117.8 648 83.2
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1110.5 585 89.6
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1110.1 594 89.9
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1103.6 647 83.0
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1092.4 651 80.8
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1084.3 643 82.4
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 6.0e-311 1070.5 645 80.9
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.5e-306 1055.8 581 85.5
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 2.6e-306 1055.0 674 75.7
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 2.6e-303 1045.0 580 85.0
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 4.5e-303 1044.3 574 85.9
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 5.0e-302 1040.8 553 88.8
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 2.3e-299 1031.9 586 84.0
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.5e-293 1011.9 565 83.9
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.0e-290 1002.3 554 84.5
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.6e-287 992.6 613 79.6
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 1.5e-253 879.8 474 87.8
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 5.6e-229 798.1 530 71.7
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 2.7e-199 699.5 423 82.5
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 3.9e-198 695.7 393 84.5
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 8.5e-193 677.9 585 58.8
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 6.4e-148 528.9 267 93.3
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 6.2e-127 459.1 553 47.7
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 2.0e-72 278.1 217 63.1
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.2e-69 268.9 125 96.8
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.7e-44 185.3 151 63.6
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.5e-43 182.2 101 83.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 5.7e-40 170.2 97 83.5
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 6.6e-36 156.8 150 58.0
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.7e-20 105.5 53 92.5
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.9e-19 102.1 53 90.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.5e-08 65.9 32 93.8


User provided reference genes

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