Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 8.5e-232 806.6 397 100.0
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 9.0e-157 557.4 412 70.1
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 3.8e-155 552.0 411 69.8
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 3.2e-154 548.9 416 68.3
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 5.1e-152 541.6 410 68.5
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 2.5e-151 539.3 411 69.3
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.2e-150 536.2 407 68.3
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 4.8e-150 535.0 412 68.7
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 6.3e-150 534.6 406 68.2
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 4.1e-149 531.9 415 68.0
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 4.1e-149 531.9 415 68.0
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 3.4e-148 528.9 411 67.4
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 1.3e-147 526.9 409 68.2
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 2.2e-147 526.2 413 66.6
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.2e-147 526.2 411 65.5
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.1e-146 523.9 408 66.2
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 3.2e-146 522.3 411 66.2
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 4.2e-146 521.9 404 66.8
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 4.2e-146 521.9 408 65.0
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 2.1e-145 519.6 406 66.7
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 2.1e-145 519.6 409 65.8
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 3.6e-145 518.8 412 65.8
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.9e-145 517.7 413 64.9
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 1.0e-144 517.3 409 66.5
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 1.4e-144 516.9 413 65.6
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 1.4e-144 516.9 412 64.1
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.8e-144 516.5 409 65.8
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 6.7e-144 514.6 413 66.6
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 6.7e-144 514.6 414 64.0
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 1.1e-143 513.8 412 65.5
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 1.5e-143 513.5 416 64.7
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.0e-143 513.1 412 64.8
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.0e-143 513.1 409 65.5
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 2.0e-143 513.1 420 65.0
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.5e-143 512.7 411 65.0
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 3.3e-143 512.3 401 65.8
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 3.3e-143 512.3 415 64.6
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 4.3e-143 511.9 409 63.8
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 7.4e-143 511.1 416 63.2
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 1.3e-142 510.4 406 64.8
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 2.2e-142 509.6 401 66.3
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 2.2e-142 509.6 412 68.7
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 2.8e-142 509.2 409 63.6
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 3.7e-142 508.8 409 63.3
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 3.7e-142 508.8 409 63.3
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 1.1e-141 507.3 419 63.2
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 3.1e-141 505.8 408 65.4
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 5.3e-141 505.0 415 63.4
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 6.9e-141 504.6 408 63.0
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 1.2e-140 503.8 417 63.3
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.2e-140 503.8 401 65.1
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.5e-140 503.4 422 62.8
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 2.0e-140 503.1 412 63.1
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 2.0e-140 503.1 415 63.4
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 3.4e-140 502.3 415 64.8
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 4.5e-140 501.9 416 63.0
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 7.7e-140 501.1 412 62.6
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 1.7e-139 500.0 417 61.9
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 2.2e-139 499.6 417 62.1
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 2.9e-139 499.2 414 63.3
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 2.9e-139 499.2 409 65.0
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 5.0e-139 498.4 418 61.7
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 6.5e-139 498.0 416 63.0
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.4e-138 496.9 409 65.0
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 1.9e-138 496.5 413 63.4
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 1.6e-137 493.4 416 61.5
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 2.7e-137 492.7 422 61.1
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.6e-137 492.3 411 63.7
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 4.7e-137 491.9 412 62.4
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 7.9e-137 491.1 416 62.3
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 1.8e-136 490.0 401 62.8
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 1.8e-136 490.0 413 61.3
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 2.3e-136 489.6 406 62.8
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 8.8e-136 487.6 409 62.3
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 8.8e-136 487.6 410 62.7
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 1.1e-135 487.3 414 61.6
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.5e-135 486.9 398 64.6
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 2.0e-135 486.5 442 60.4
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 1.3e-134 483.8 414 60.9
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.3e-134 483.8 410 62.9
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 1.7e-134 483.4 405 61.2
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 3.7e-134 482.3 451 57.6
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 1.1e-133 480.7 419 60.1
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 1.4e-133 480.3 399 62.2
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 7.0e-133 478.0 399 61.9
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.2e-132 477.2 412 63.1
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 2.0e-132 476.5 401 61.8
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.3e-131 473.8 407 61.4
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 1.7e-131 473.4 378 64.3
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 3.8e-131 472.2 403 60.8
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 1.1e-130 470.7 441 58.0
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 4.2e-130 468.8 376 66.2
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 9.4e-130 467.6 417 60.0
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 2.7e-129 466.1 357 66.9
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 1.8e-128 463.4 412 60.0
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 3.0e-128 462.6 402 59.7
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 3.3e-127 459.1 401 59.1
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 1.3e-126 457.2 408 61.0
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 2.8e-126 456.1 409 59.2
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 1.4e-125 453.8 423 57.7
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.8e-125 453.4 407 59.0
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 4.1e-125 452.2 409 58.7
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 5.3e-125 451.8 406 58.1
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 9.1e-125 451.1 406 59.4
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 9.1e-125 451.1 402 60.7
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 2.6e-124 449.5 407 58.2
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 4.5e-124 448.7 407 57.2
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 7.7e-124 448.0 409 57.9
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 7.7e-124 448.0 409 57.9
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 6.5e-123 444.9 404 57.9
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 8.5e-123 444.5 402 59.0
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.1e-122 444.1 374 61.5
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 1.9e-122 443.4 410 57.8
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 2.5e-122 443.0 402 57.5
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 5.5e-122 441.8 403 57.6
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 5.5e-122 441.8 398 59.3
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 4.7e-121 438.7 414 57.7
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.8e-120 436.8 407 57.5
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 3.0e-120 436.0 408 58.1
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 2.0e-119 433.3 404 56.2
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 2.0e-119 433.3 407 55.8
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 2.2e-118 429.9 327 66.7
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 8.3e-118 427.9 409 56.5
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 3.1e-117 426.0 354 59.6
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 1.2e-116 424.1 362 59.9
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 3.5e-116 422.5 417 53.2
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 2.2e-115 419.9 414 56.5
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.1e-114 417.5 404 55.2
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 1.5e-114 417.2 411 52.6
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 4.2e-114 415.6 415 54.5
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 4.2e-114 415.6 415 54.5
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 6.1e-113 411.8 407 54.3
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 6.8e-112 408.3 412 53.9
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 1.5e-111 407.1 404 53.2
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 2.8e-110 402.9 411 52.6
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 1.8e-109 400.2 396 57.3
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 3.1e-109 399.4 430 51.4
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 3.5e-108 396.0 353 58.1
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 1.1e-106 391.0 409 52.8
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 1.4e-104 384.0 279 67.0
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 2.2e-102 376.7 332 57.2
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 3.5e-100 369.4 340 56.2
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 3.1e-96 356.3 289 62.6
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-93 347.4 393 52.7
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 2.3e-91 340.1 360 55.6
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 1.9e-90 337.0 428 47.9
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 1.9e-90 337.0 406 46.6
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 6.2e-89 332.0 363 51.5
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 8.9e-88 328.2 400 48.2
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.6e-84 315.8 382 51.0
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 6.0e-84 315.5 306 52.9
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 3.9e-83 312.8 417 43.4
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 9.9e-79 298.1 419 41.3
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 2.2e-78 297.0 318 51.3
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 3.1e-72 276.6 311 51.1
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 4.4e-71 272.7 460 36.1
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 5.3e-64 249.2 397 40.3
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 6.4e-62 242.3 258 50.8
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 7.3e-58 228.8 258 50.0
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 5.8e-47 192.6 232 46.6
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 3.3e-34 150.2 214 44.9
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 3.4e-31 140.2 223 41.3
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 7.7e-31 139.0 105 61.9
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 2.9e-30 137.1 220 41.4
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 1.6e-28 131.3 141 53.9
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 8.8e-27 125.6 116 56.9
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 1.1e-26 125.2 115 57.4
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 2.0e-26 124.4 116 56.0
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 3.3e-26 123.6 143 51.0
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 4.8e-25 119.8 422 26.8
Actinidia14145 Actinidia chinensis HOM05D003678 ORTHO05D004340 9.1e-24 115.5 108 59.3
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 9.1e-24 115.5 292 27.1
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 2.0e-23 114.4 480 25.0
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 4.7e-20 103.2 128 42.2
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 8.8e-19 99.0 135 47.4
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.1e-18 98.6 78 60.3
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 8.2e-17 92.4 98 55.1
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 9.1e-16 89.0 91 56.0
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 2.6e-15 87.4 56 67.9
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 1.3e-14 85.1 55 69.1
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 2.2e-09 67.8 83 43.4
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 1.1e-08 65.5 52 55.8
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.2e-07 62.0 51 47.1
MCO10G355 Micromonas commoda HOM05D003678 ORTHO05D004340 1.6e-07 61.6 108 33.3
C02p36580 Brassica napus HOM05D022214 ORTHO05D024595 2.9e-06 57.4 54 46.3
BolC7t42216H Brassica oleracea HOM05D022214 ORTHO05D024595 2.9e-06 57.4 54 46.3
C07p17100 Brassica napus HOM05D022214 ORTHO05D024595 8.5e-06 55.8 54 44.4


User provided reference genes

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