Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 4.8e-117 424.5 207 100.0
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 5.5e-89 331.3 216 76.4
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 2.0e-83 312.8 214 73.8
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 8.8e-71 270.8 211 64.0
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 7.4e-70 267.7 204 66.7
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.3e-69 266.9 210 64.8
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 2.2e-69 266.2 207 64.3
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.8e-68 263.1 185 72.4
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 7.0e-68 261.2 210 63.8
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 6.5e-66 254.6 214 62.6
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 2.5e-65 252.7 211 62.1
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 4.2e-65 251.9 204 63.7
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 4.2e-65 251.9 210 62.4
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 4.2e-65 251.9 210 61.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 9.4e-65 250.8 210 62.9
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.6e-64 250.0 214 60.3
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.1e-64 249.6 205 62.0
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.7e-64 249.2 206 62.1
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.7e-64 248.4 208 59.1
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 4.7e-64 248.4 208 59.6
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 4.7e-64 248.4 211 61.6
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 8.0e-64 247.7 208 60.6
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 8.0e-64 247.7 209 59.3
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.4e-63 246.9 203 62.6
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.4e-63 246.9 211 60.7
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 2.3e-63 246.1 203 60.6
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 2.3e-63 246.1 203 60.6
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 3.0e-63 245.7 205 61.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 4.0e-63 245.4 210 60.5
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 4.0e-63 245.4 211 59.7
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 5.2e-63 245.0 214 60.3
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 6.7e-63 244.6 208 59.6
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.8e-63 244.2 214 59.3
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.2e-62 243.8 211 60.2
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.5e-62 243.4 208 58.7
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 2.0e-62 243.0 212 58.5
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 4.4e-62 241.9 209 60.8
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 4.4e-62 241.9 209 62.7
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 4.4e-62 241.9 211 60.7
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 5.7e-62 241.5 210 59.0
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 5.7e-62 241.5 204 60.8
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 9.7e-62 240.7 203 61.6
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 9.7e-62 240.7 199 63.3
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.7e-61 240.0 209 58.9
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.8e-61 239.2 208 58.7
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 4.8e-61 238.4 203 61.6
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 4.8e-61 238.4 204 60.8
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 4.8e-61 238.4 209 59.8
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.3e-61 238.0 208 60.1
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 8.2e-61 237.7 212 60.4
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 2.4e-60 236.1 201 60.2
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.4e-60 236.1 209 57.9
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.4e-60 236.1 203 60.6
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.1e-60 235.7 209 58.4
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.1e-60 235.7 208 57.7
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 3.1e-60 235.7 197 61.9
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 4.1e-60 235.3 205 57.6
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 4.1e-60 235.3 210 61.4
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 9.1e-60 234.2 209 58.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 9.1e-60 234.2 200 58.5
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 1.2e-59 233.8 210 59.0
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.6e-59 233.4 209 58.4
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 2.0e-59 233.0 205 59.0
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 2.7e-59 232.6 208 59.1
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 3.5e-59 232.3 209 58.9
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 4.5e-59 231.9 201 57.7
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 5.9e-59 231.5 203 59.1
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.0e-58 230.7 202 58.4
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.0e-58 230.7 203 58.6
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.0e-58 230.7 206 58.3
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.7e-58 229.9 210 58.1
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 2.2e-58 229.6 200 59.0
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 2.9e-58 229.2 202 56.9
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 5.0e-58 228.4 200 58.5
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.9e-57 226.5 249 51.0
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 3.2e-57 225.7 204 57.4
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 6.1e-56 221.5 202 55.4
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 6.1e-56 221.5 200 56.0
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 8.0e-56 221.1 200 55.5
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.0e-55 220.7 202 57.4
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 3.0e-55 219.2 193 59.6
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 4.0e-55 218.8 200 56.0
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.2e-54 217.2 200 55.5
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 5.7e-54 214.9 200 55.0
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 9.8e-54 214.2 231 51.5
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 9.8e-54 214.2 200 55.5
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.3e-53 213.8 181 60.8
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.2e-53 213.0 194 58.2
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.8e-53 212.6 134 74.6
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 5.4e-52 208.4 214 55.6
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 9.1e-52 207.6 189 58.7
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 2.7e-51 206.1 241 47.7
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 8.6e-50 201.1 186 55.9
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 7.2e-49 198.0 210 51.0
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 8.9e-47 191.0 186 54.8
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.2e-45 186.4 208 50.0
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 3.7e-45 185.7 158 62.7
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 3.7e-45 185.7 217 47.5
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.4e-44 183.7 209 50.7
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 4.1e-44 182.2 206 51.0
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 9.2e-44 181.0 121 69.4
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.2e-43 180.6 158 59.5
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 8.6e-42 174.5 229 45.4
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 7.3e-41 171.4 162 51.9
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.8e-40 169.5 200 51.0
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 3.6e-40 169.1 198 49.0
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 4.7e-40 168.7 205 46.3
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.7e-37 160.2 201 46.3
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 3.7e-37 159.1 159 52.8
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 2.4e-36 156.4 205 42.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.2e-35 154.1 96 72.9
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.2e-35 154.1 136 58.1
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 8.6e-34 147.9 171 50.3
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 4.7e-32 142.1 155 52.3
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 8.0e-32 141.4 148 51.4
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.6e-30 136.3 202 41.6
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 2.9e-29 132.9 77 77.9
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 4.1e-28 129.0 203 41.9
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 6.8e-23 111.7 130 50.8
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 1.3e-21 107.5 67 65.7
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 3.7e-21 105.9 69 69.6
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.2e-16 90.9 57 66.7
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 8.1e-16 88.2 94 47.9
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 8.1e-16 88.2 149 36.2
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.1e-15 86.3 49 77.6
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 5.8e-14 82.0 58 67.2
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 9.9e-14 81.3 52 69.2
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 8.4e-13 78.2 49 71.4
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.2e-12 76.3 105 45.7
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 3.2e-12 76.3 47 74.5
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 5.4e-12 75.5 71 53.5
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.6e-11 73.9 47 72.3
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.6e-11 72.4 47 70.2
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.9e-10 69.3 43 72.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 8.7e-10 68.2 43 72.1
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.6e-06 56.6 119 31.9
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 5.8e-06 55.5 29 86.2


User provided reference genes

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