Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 5.0e-229 797.3 382 100.0
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 2.2e-152 542.7 434 63.1
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 3.0e-149 532.3 411 65.5
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 3.4e-100 369.4 385 50.9
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 5.7e-100 368.6 365 51.2
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 7.0e-98 361.7 375 50.1
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 3.5e-97 359.4 363 49.9
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 6.5e-96 355.1 374 49.5
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 4.7e-94 349.0 382 48.7
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 6.1e-94 348.6 386 49.0
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 3.0e-93 346.3 368 49.2
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 9.8e-92 341.3 369 48.2
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 1.7e-91 340.5 407 45.5
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.8e-91 339.7 374 47.6
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 8.3e-91 338.2 367 47.4
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 1.2e-89 334.3 388 45.6
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.6e-89 334.0 376 47.3
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.0e-88 328.9 403 43.7
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 1.5e-87 327.4 387 46.8
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 7.2e-87 325.1 351 49.3
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 4.7e-86 322.4 368 47.3
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.0e-85 319.7 352 48.0
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 5.7e-84 315.5 368 44.8
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 9.8e-84 314.7 381 44.9
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.3e-83 314.3 369 45.5
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 3.7e-83 312.8 397 46.9
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 8.3e-83 311.6 378 43.7
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.4e-82 310.8 380 43.9
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 5.4e-82 308.9 382 47.4
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.7e-80 303.9 363 44.1
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.7e-80 303.9 363 44.1
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 2.3e-80 303.5 326 51.2
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 8.6e-80 301.6 386 44.3
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 1.1e-79 301.2 394 44.7
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 1.1e-79 301.2 382 44.2
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 1.9e-79 300.4 366 43.7
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 3.3e-79 299.7 301 52.2
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.4e-77 294.3 404 42.8
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 1.8e-77 293.9 374 44.1
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.8e-77 293.9 367 45.5
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 4.0e-77 292.7 305 50.5
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 6.8e-77 292.0 384 44.3
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 2.6e-76 290.0 384 43.5
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 5.8e-76 288.9 366 45.1
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 7.5e-76 288.5 366 44.5
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.3e-75 287.7 448 41.1
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.9e-75 286.6 403 40.4
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 1.1e-74 284.6 376 42.8
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.4e-74 284.3 293 50.5
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.4e-74 283.5 370 42.2
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 2.4e-74 283.5 382 45.3
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.2e-74 283.1 375 42.4
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 7.0e-74 282.0 381 41.7
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 9.2e-74 281.6 368 44.3
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.2e-73 281.2 372 42.7
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.6e-73 280.8 375 42.1
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 3.5e-73 279.6 382 44.8
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 4.6e-73 279.3 375 42.7
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 1.3e-72 277.7 393 42.0
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 3.0e-72 276.6 376 43.1
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.9e-72 276.2 377 41.6
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.5e-71 274.2 364 41.8
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 2.5e-71 273.5 394 40.9
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 2.5e-71 273.5 384 40.1
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 4.3e-71 272.7 376 43.9
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.3e-71 271.9 364 41.5
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-70 271.2 365 43.6
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 2.1e-70 270.4 373 42.1
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 6.2e-70 268.9 299 46.5
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 6.2e-70 268.9 365 43.0
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 6.2e-70 268.9 371 42.0
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.1e-69 268.1 288 47.6
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 1.1e-69 268.1 376 42.6
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 2.3e-69 266.9 366 41.3
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 5.2e-69 265.8 298 47.7
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 2.0e-68 263.8 313 47.6
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 9.8e-68 261.5 430 37.7
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.9e-67 260.0 356 41.3
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 4.9e-67 259.2 300 47.3
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 3.2e-66 256.5 369 40.4
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 5.4e-66 255.8 403 39.5
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 7.1e-66 255.4 421 38.5
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.2e-65 254.6 421 38.5
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 2.1e-65 253.8 419 38.7
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 2.7e-65 253.4 374 41.7
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 3.5e-65 253.1 419 39.6
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 4.6e-65 252.7 424 37.5
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 6.0e-65 252.3 424 39.4
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 6.0e-65 252.3 424 37.5
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 7.8e-65 251.9 427 37.5
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.0e-64 251.5 424 37.3
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 2.3e-64 250.4 428 38.1
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.0e-64 250.0 430 37.0
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 5.6e-63 245.7 381 40.4
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 9.5e-63 245.0 378 39.9
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.2e-62 244.6 377 39.8
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.6e-62 244.2 387 40.1
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 3.6e-62 243.0 405 38.3
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 4.7e-62 242.7 412 37.6
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.1e-61 241.5 472 36.4
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 3.7e-59 233.0 289 42.9
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 1.2e-57 228.0 297 44.1
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-57 228.0 367 40.3
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.7e-57 226.9 287 46.3
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 3.9e-56 223.0 418 35.2
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 4.3e-55 219.5 412 37.1
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 5.6e-55 219.2 254 47.6
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.8e-54 216.9 289 41.5
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.7e-51 207.6 300 42.0
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 3.8e-51 206.5 419 33.9
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 1.7e-48 197.6 334 38.3
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 3.3e-47 193.4 354 36.2
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.3e-46 191.4 347 37.5
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.6e-46 189.9 356 34.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.9e-45 185.7 327 36.4
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 5.8e-44 182.6 244 44.7
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 3.2e-42 176.8 143 61.5
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 6.0e-41 172.6 221 43.9
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 1.3e-40 171.4 156 56.4
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 5.1e-40 169.5 341 35.2
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.9e-39 167.5 374 33.2
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.6e-38 164.5 359 34.5
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 8.1e-38 162.2 220 42.3
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 2.9e-35 153.7 151 53.0
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.9e-34 151.0 378 30.2
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 7.1e-34 149.1 237 34.2
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 1.2e-33 148.3 384 33.6
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 6.7e-32 142.5 150 50.7
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 8.7e-32 142.1 400 29.8
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 2.5e-31 140.6 234 35.9
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.3e-31 139.8 375 30.4
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.3e-30 138.3 192 43.2
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 1.3e-30 138.3 231 35.9
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 4.8e-30 136.3 292 34.9
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 4.9e-27 126.3 170 42.4
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.4e-26 124.8 234 34.2
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 1.9e-26 124.4 103 60.2
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 3.2e-26 123.6 255 34.9
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 3.7e-22 110.2 107 52.3
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 4.1e-21 106.7 123 48.8
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.9e-21 105.9 177 35.0
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 6.9e-21 105.9 177 35.0
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 4.5e-20 103.2 97 52.6
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 6.1e-17 92.8 180 35.0
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 7.9e-17 92.4 406 24.4
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 1.0e-16 92.0 393 26.5
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.3e-16 90.9 382 28.0
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 3.0e-16 90.5 127 42.5
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 3.7e-14 83.6 195 29.7
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 6.9e-13 79.3 391 23.5
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 9.0e-13 79.0 129 35.7
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.4e-12 77.0 213 25.8
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 3.4e-12 77.0 460 23.0
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 5.0e-11 73.2 348 28.2
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 1.4e-10 71.6 361 25.8
HanXRQChr07g0186331 Helianthus annuus HOM05D004448 ORTHO05D220806 3.2e-10 70.5 35 91.4
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 9.4e-10 68.9 182 32.4
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 1.6e-09 68.2 58 51.7
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 1.4e-08 65.1 185 28.1
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 2.3e-08 64.3 106 36.8
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 3.9e-08 63.5 80 41.2


User provided reference genes

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