Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 1.3e-52 209.5 110 100.0
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 6.0e-10 67.8 36 91.7
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 6.0e-10 67.8 36 91.7
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 6.0e-10 67.8 36 91.7
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 6.0e-10 67.8 36 91.7
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 6.0e-10 67.8 36 91.7
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 6.0e-10 67.8 36 91.7
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 6.0e-10 67.8 36 91.7
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 7.8e-10 67.4 36 88.9
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 7.8e-10 67.4 36 88.9
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 7.8e-10 67.4 36 88.9
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.0e-09 67.0 36 88.9
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 88.9
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 88.9
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 86.1
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 88.9
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 88.9
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 88.9
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 88.9
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 88.9
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 2.3e-09 65.9 36 88.9
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 3.0e-09 65.5 36 88.9
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 3.0e-09 65.5 36 86.1
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 3.0e-09 65.5 36 86.1
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 3.0e-09 65.5 36 86.1
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 3.0e-09 65.5 36 86.1
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 3.0e-09 65.5 36 86.1
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 3.9e-09 65.1 36 88.9
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 3.9e-09 65.1 36 86.1
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 3.9e-09 65.1 36 86.1
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 3.9e-09 65.1 36 88.9
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 3.9e-09 65.1 36 88.9
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 3.9e-09 65.1 36 88.9
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 3.9e-09 65.1 36 86.1
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 5.1e-09 64.7 36 86.1
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 6.6e-09 64.3 36 86.1
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 80.6
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 80.6
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 83.3
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 86.1
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 86.1
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 86.1
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 86.1
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 83.3
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 83.3
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 8.7e-09 63.9 36 86.1
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 1.1e-08 63.5 36 83.3
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.1e-08 63.5 36 80.6
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.1e-08 63.5 36 80.6
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 1.5e-08 63.2 36 83.3
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 1.5e-08 63.2 36 83.3
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 1.5e-08 63.2 36 83.3
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.5e-08 63.2 36 83.3
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.9e-08 62.8 36 83.3
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.9e-08 62.8 36 83.3
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 1.9e-08 62.8 36 80.6
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 1.9e-08 62.8 36 83.3
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 1.9e-08 62.8 36 83.3
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 1.9e-08 62.8 36 77.8
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.9e-08 62.8 36 77.8
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 2.5e-08 62.4 36 83.3
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 2.5e-08 62.4 36 83.3
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 2.5e-08 62.4 36 83.3
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 2.5e-08 62.4 36 83.3
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 2.5e-08 62.4 36 83.3
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 80.6
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 3.3e-08 62.0 36 80.6
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 3.3e-08 62.0 36 83.3
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 4.3e-08 61.6 47 72.3
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 4.3e-08 61.6 36 83.3
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 4.3e-08 61.6 36 83.3
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 4.3e-08 61.6 36 80.6
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 4.3e-08 61.6 36 80.6
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 4.3e-08 61.6 36 80.6
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 4.3e-08 61.6 36 83.3
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 5.6e-08 61.2 36 80.6
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 5.6e-08 61.2 36 80.6
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 7.3e-08 60.8 36 77.8
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 7.3e-08 60.8 36 80.6
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.3e-07 60.1 36 80.6
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.3e-07 60.1 36 77.8
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 1.6e-07 59.7 36 77.8
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.6e-07 59.7 36 80.6
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 2.1e-07 59.3 36 77.8
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.1e-07 59.3 36 77.8
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 2.1e-07 59.3 36 77.8
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 6.2e-07 57.8 36 75.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.8e-06 56.2 41 73.2
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 2.4e-06 55.8 33 75.8
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 5.3e-06 54.7 30 86.7
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 5.3e-06 54.7 33 75.8
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 6.9e-06 54.3 36 77.8


User provided reference genes

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