Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0346721 Helianthus annuus HOM05D002340 ORTHO05D220143 9.7e-80 300.1 148 100.0
HanXRQChr14g0432651 Helianthus annuus HOM05D002340 ORTHO05D013266 4.7e-10 68.6 52 65.4
HanXRQChr15g0484831 Helianthus annuus HOM05D002340 ORTHO05D003624 1.4e-09 67.0 52 67.3
Lsat_1_v5_gn_5_60361 Lactuca sativa HOM05D002340 ORTHO05D003624 2.4e-09 66.2 47 72.3
Hma1.2p1_0663F.1_g198380 Hydrangea macrophylla HOM05D002340 ORTHO05D003624 5.2e-09 65.1 47 70.2
Lj4A371G17 Lonicera japonica HOM05D002340 ORTHO05D003624 5.2e-09 65.1 47 70.2
HanXRQChr03g0082931 Helianthus annuus HOM05D002340 ORTHO05D003624 8.9e-09 64.3 47 70.2
ECA232G4989 Erigeron canadensis HOM05D002340 ORTHO05D003624 1.2e-08 63.9 40 75.0
HanXRQChr03g0082941 Helianthus annuus HOM05D002340 ORTHO05D003624 2.0e-08 63.2 47 70.2
Hma1.2p1_0012F.1_g007410 Hydrangea macrophylla HOM05D002340 ORTHO05D013266 2.0e-08 63.2 58 60.3
MSTRG.25252 Avicennia marina HOM05D002340 ORTHO05D003624 2.6e-08 62.8 47 68.1
CSS0024858 Camellia sinensis var. sinensis HOM05D002340 ORTHO05D003624 2.6e-08 62.8 50 62.0
ClCG03G016050 Citrullus lanatus HOM05D002340 ORTHO05D003624 2.6e-08 62.8 40 72.5
MELO3C015422.2 Cucumis melo HOM05D002340 ORTHO05D003624 2.6e-08 62.8 40 72.5
CsaV3_1G039910 Cucumis sativus L. HOM05D002340 ORTHO05D003624 2.6e-08 62.8 40 72.5
ECA240G1136 Erigeron canadensis HOM05D002340 ORTHO05D003624 2.6e-08 62.8 47 68.1
DCAR_024710 Daucus carota HOM05D002340 ORTHO05D003624 3.4e-08 62.4 41 70.7
SalBow7G2393 Salvia bowleyana HOM05D002340 ORTHO05D003624 3.4e-08 62.4 47 66.0
CAN.G1964.3 Capsicum annuum HOM05D002340 ORTHO05D003624 4.4e-08 62.0 40 72.5
Cc06_g10610 Coffea canephora HOM05D002340 ORTHO05D003624 4.4e-08 62.0 40 72.5
Hma1.2p1_0785F.1_g217340 Hydrangea macrophylla HOM05D002340 ORTHO05D003624 4.4e-08 62.0 45 71.1
Gohir.D08G158401 Gossypium hirsutum HOM05D002340 ORTHO05D013266 7.6e-08 61.2 40 67.5
Nitab4.5_0000566g0240 Nicotiana tabacum HOM05D002340 ORTHO05D003624 7.6e-08 61.2 40 72.5
Nitab4.5_0001242g0120 Nicotiana tabacum HOM05D002340 ORTHO05D003624 7.6e-08 61.2 40 72.5
Nitab4.5_0003079g0060 Nicotiana tabacum HOM05D002340 ORTHO05D003624 7.6e-08 61.2 40 72.5
Nitab4.5_0004673g0010 Nicotiana tabacum HOM05D002340 ORTHO05D003624 7.6e-08 61.2 40 72.5
Peaxi162Scf00944g00011 Petunia axillaris HOM05D002340 ORTHO05D003624 7.6e-08 61.2 40 72.5
SalBow1G3042 Salvia bowleyana HOM05D002275 ORTHO05D006235 7.6e-08 61.2 47 66.0
SGA_v2.0_scaffold92G28226 Striga asiatica HOM05D002340 ORTHO05D003624 7.6e-08 61.2 47 66.0
Oeu041057.1 Olea europaea HOM05D002340 ORTHO05D003624 9.9e-08 60.8 47 66.0
Sed0015409 Sechium edule HOM05D002340 ORTHO05D003624 9.9e-08 60.8 40 70.0
Sed0028067 Sechium edule HOM05D002340 ORTHO05D003624 9.9e-08 60.8 40 70.0
CSS0027203 Camellia sinensis var. sinensis HOM05D002340 ORTHO05D003624 1.3e-07 60.5 47 63.8
Dinv36722 Davidia involucrata HOM05D002340 ORTHO05D003624 1.3e-07 60.5 47 66.0
MBI04_g07003_MAGBIO Magnolia biondii HOM05D002340 ORTHO05D003624 1.3e-07 60.5 52 59.6
Actinidia17513 Actinidia chinensis HOM05D002340 ORTHO05D003624 1.7e-07 60.1 47 66.0
Dinv42257 Davidia involucrata HOM05D002340 ORTHO05D003624 1.7e-07 60.1 47 66.0
Hund26287 Selenicereus undatus HOM05D002340 ORTHO05D003624 1.7e-07 60.1 40 67.5
Aqoxy2G01698 Aquilegia oxysepala HOM05D002340 ORTHO05D003624 2.2e-07 59.7 72 52.8
CSS0000125 Camellia sinensis var. sinensis HOM05D002340 ORTHO05D013266 2.9e-07 59.3 47 61.7
CANSAT11G1397 Cannabis sativa HOM05D002340 ORTHO05D003624 2.9e-07 59.3 58 56.9
CDE05G0481 Ceratophyllum demersum HOM05D002340 ORTHO05D003624 2.9e-07 59.3 40 70.0
AUR62021390 Chenopodium quinoa HOM05D002340 ORTHO05D003624 2.9e-07 59.3 62 54.8
Gohir.D08G264300 Gossypium hirsutum HOM05D002340 ORTHO05D003624 2.9e-07 59.3 60 53.3
Os05g0163000 Oryza sativa ssp. japonica HOM05D002340 ORTHO05D003624 2.9e-07 59.3 39 69.2
Rhsim05G0038200 Rhododendron simsii HOM05D002340 ORTHO05D003624 2.9e-07 59.3 47 63.8
Solyc12g008570.3 Solanum lycopersicum HOM05D002340 ORTHO05D003624 2.9e-07 59.3 47 66.0
Sopen12g003510 Solanum pennellii HOM05D002340 ORTHO05D003624 2.9e-07 59.3 47 66.0
PGSC0003DMG400000355 Solanum tuberosum HOM05D002340 ORTHO05D003624 2.9e-07 59.3 47 66.0
Thecc.09G098900 Theobroma cacao HOM05D002340 ORTHO05D003624 2.9e-07 59.3 38 73.7
TWI63G0999 Tripterygium wilfordii HOM05D002340 ORTHO05D003624 2.9e-07 59.3 40 67.5
vmacro10846 Vaccinium macrocarpon HOM05D002340 ORTHO05D003624 2.9e-07 59.3 47 63.8
Zm00001eb282310 Zea mays HOM05D002340 ORTHO05D003624 2.9e-07 59.3 39 71.8
Zm00001eb353940 Zea mays HOM05D002340 ORTHO05D003624 2.9e-07 59.3 39 71.8
arahy.Tifrunner.gnm1.ann1.P5D7YP Arachis hypogaea HOM05D002340 ORTHO05D003624 3.8e-07 58.9 40 67.5
MSTRG.1189 Avicennia marina HOM05D002340 ORTHO05D003624 3.8e-07 58.9 40 67.5
CANSAT56G1193 Cannabis sativa HOM05D002340 ORTHO05D003624 3.8e-07 58.9 40 67.5
CANSAT56G1362 Cannabis sativa HOM05D002340 ORTHO05D003624 3.8e-07 58.9 40 67.5
CiPaw.04G155400 Carya illinoinensis HOM05D002340 ORTHO05D003624 3.8e-07 58.9 56 55.4
Migut.C00842 Erythranthe guttata HOM05D002340 ORTHO05D003624 3.8e-07 58.9 36 72.2
Cpa.g.sc78.27 Carica papaya HOM05D002340 ORTHO05D003624 4.9e-07 58.5 45 66.7
Cpa.g.sc78.29 Carica papaya HOM05D002340 ORTHO05D003624 4.9e-07 58.5 45 66.7
AUR62010877 Chenopodium quinoa HOM05D002340 ORTHO05D003624 4.9e-07 58.5 62 53.2
COL.COLO4_34725 Corchorus olitorius HOM05D002340 ORTHO05D003624 4.9e-07 58.5 47 61.7
Sc18g0001570 Simmondsia chinensis HOM05D002340 ORTHO05D003624 4.9e-07 58.5 40 67.5
GSVIVG01015286001 Vitis vinifera HOM05D002340 ORTHO05D003624 4.9e-07 58.5 47 63.8
Gohir.A05G026400 Gossypium hirsutum HOM05D002340 ORTHO05D003624 6.4e-07 58.2 40 67.5
Gohir.D05G027900 Gossypium hirsutum HOM05D002340 ORTHO05D003624 6.4e-07 58.2 40 67.5
Gohir.D05G028100 Gossypium hirsutum HOM05D002340 ORTHO05D003624 6.4e-07 58.2 40 67.5
Gohir.D05G183732 Gossypium hirsutum HOM05D002340 ORTHO05D013266 6.4e-07 58.2 40 67.5
Gorai.009G028100 Gossypium raimondii HOM05D002340 ORTHO05D003624 6.4e-07 58.2 40 67.5
Nitab4.5_0007786g0040 Nicotiana tabacum HOM05D002340 ORTHO05D013266 6.4e-07 58.2 38 73.7
Os01g0158500 Oryza sativa ssp. japonica HOM05D002340 ORTHO05D003624 6.4e-07 58.2 39 69.2
Gohir.A08G243400 Gossypium hirsutum HOM05D002340 ORTHO05D003624 8.4e-07 57.8 47 61.7
Gorai.004G282200 Gossypium raimondii HOM05D002340 ORTHO05D003624 8.4e-07 57.8 47 61.7
THA.LOC104817738 Tarenaya hassleriana HOM05D002340 ORTHO05D003624 8.4e-07 57.8 45 64.4
Manes.16G107800 Manihot esculenta HOM05D002340 ORTHO05D003624 1.1e-06 57.4 45 64.4
unitig_46.g18028 Utricularia gibba HOM05D002340 ORTHO05D003624 1.1e-06 57.4 47 61.7
EL10Ac5g10899 Beta vulgaris HOM05D002340 ORTHO05D003624 1.4e-06 57.0 47 59.6
CSS0027979 Camellia sinensis var. sinensis HOM05D002340 ORTHO05D013266 1.4e-06 57.0 45 62.2
Phvul.004G174700 Phaseolus vulgaris HOM05D002340 ORTHO05D003624 1.4e-06 57.0 40 65.0
TAR624G0296 Trochodendron aralioides HOM05D002340 ORTHO05D003624 1.4e-06 57.0 40 65.0
VMungo0464G1080 Vigna mungo HOM05D002340 ORTHO05D003624 1.4e-06 57.0 40 65.0
arahy.Tifrunner.gnm1.ann1.7UQC80 Arachis hypogaea HOM05D002340 ORTHO05D003624 1.9e-06 56.6 38 68.4
arahy.Tifrunner.gnm1.ann1.V4S00D Arachis hypogaea HOM05D002340 ORTHO05D003624 1.9e-06 56.6 38 68.4
EL10Ac8g18367 Beta vulgaris HOM05D002340 ORTHO05D003624 1.9e-06 56.6 66 50.0
Glyma.01G006100 Glycine max HOM05D002340 ORTHO05D003624 1.9e-06 56.6 40 62.5
Glyma.10G102900 Glycine max HOM05D002340 ORTHO05D003624 1.9e-06 56.6 40 62.5
MBI04_g27274_MAGBIO Magnolia biondii HOM05D002340 ORTHO05D003624 1.9e-06 56.6 52 57.7
Nn6g34607 Nelumbo nucifera HOM05D002340 ORTHO05D013266 1.9e-06 56.6 38 68.4
Nitab4.5_0003413g0060 Nicotiana tabacum HOM05D002340 ORTHO05D013266 1.9e-06 56.6 38 71.1
Psat3g015880 Pisum sativum HOM05D002340 ORTHO05D003624 1.9e-06 56.6 40 65.0
PGR102G0228 Punica granatum HOM05D002340 ORTHO05D003624 1.9e-06 56.6 47 59.6
Atru.chr10.2308 Acer truncatum HOM05D002340 ORTHO05D003624 2.4e-06 56.2 39 66.7
Atru.chr12.1556 Acer truncatum HOM05D002340 ORTHO05D003624 2.4e-06 56.2 65 49.2
arahy.Tifrunner.gnm1.ann1.4N8NIC Arachis hypogaea HOM05D002340 ORTHO05D003624 2.4e-06 56.2 38 68.4
Gohir.D09G070750 Gossypium hirsutum HOM05D002340 ORTHO05D013266 2.4e-06 56.2 40 65.0
Gorai.006G085500 Gossypium raimondii HOM05D002340 ORTHO05D013266 2.4e-06 56.2 40 65.0
Lj2g0007018 Lotus japonicus HOM05D002340 ORTHO05D003624 2.4e-06 56.2 58 51.7
Lalb_Chr14g0371951 Lupinus albus HOM05D002340 ORTHO05D003624 2.4e-06 56.2 38 68.4
Lalb_Chr23g0270771 Lupinus albus HOM05D002340 ORTHO05D003624 2.4e-06 56.2 38 68.4
Aa31LG3G690 Aethionema arabicum HOM05D002340 ORTHO05D003624 3.2e-06 55.8 45 60.0
Haze_25836 Corylus avellana HOM05D002340 ORTHO05D003624 3.2e-06 55.8 49 61.2
Eucgr.C03716 Eucalyptus grandis HOM05D002340 ORTHO05D003624 3.2e-06 55.8 56 53.6
Psat1g050800 Pisum sativum HOM05D002340 ORTHO05D003624 3.2e-06 55.8 58 51.7
Potri.002G198500 Populus trichocarpa HOM05D002340 ORTHO05D003624 3.2e-06 55.8 46 60.9
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 3.2e-06 55.8 46 60.9
TPR.G33535 Trifolium pratense HOM05D002340 ORTHO05D003624 3.2e-06 55.8 58 51.7
Nn6g34972 Nelumbo nucifera HOM05D002340 ORTHO05D003624 4.2e-06 55.5 62 53.2
TAR626G1290 Trochodendron aralioides HOM05D002340 ORTHO05D003624 4.2e-06 55.5 47 59.6
Ca_25586_v3 Cicer arietinum L. HOM05D002340 ORTHO05D003624 5.4e-06 55.1 51 52.9
Duzib168G1789 Durio zibethinus HOM05D002340 ORTHO05D003624 5.4e-06 55.1 47 59.6
FvH4_1g06400 Fragaria vesca HOM05D002340 ORTHO05D003624 5.4e-06 55.1 38 65.8
FAN19G1928 Fragaria x ananassa HOM05D002340 ORTHO05D003624 5.4e-06 55.1 38 65.8
FAN23G3056 Fragaria x ananassa HOM05D002340 ORTHO05D003624 5.4e-06 55.1 38 65.8
FAN26G0661 Fragaria x ananassa HOM05D002340 ORTHO05D003624 5.4e-06 55.1 38 65.8
FAN26G2770 Fragaria x ananassa HOM05D002340 ORTHO05D003624 5.4e-06 55.1 38 65.8
FAN28G0482 Fragaria x ananassa HOM05D002340 ORTHO05D003624 5.4e-06 55.1 38 65.8
RcHm_v2.0_Chr2g0092141 Rosa chinensis HOM05D002340 ORTHO05D003624 5.4e-06 55.1 38 65.8
vmacro07947 Vaccinium macrocarpon HOM05D002340 ORTHO05D003624 5.4e-06 55.1 47 59.6
Ah.09g230510 Amaranthus hybridus HOM05D002340 ORTHO05D003624 7.1e-06 54.7 46 58.7
ATR0705G107 Amborella trichopoda HOM05D002340 ORTHO05D003624 7.1e-06 54.7 45 57.8
AL3G45140 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 7.1e-06 54.7 38 65.8
AL7G26650 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 7.1e-06 54.7 38 63.2
AT4G26300 Arabidopsis thaliana HOM05D002340 ORTHO05D003624 7.1e-06 54.7 38 63.2
Carub.0007s1465 Capsella rubella HOM05D002340 ORTHO05D003624 7.1e-06 54.7 38 63.2
Manes.03G028000 Manihot esculenta HOM05D002340 ORTHO05D003624 7.1e-06 54.7 45 60.0
TAR636G0019 Trochodendron aralioides HOM05D002340 ORTHO05D003624 7.1e-06 54.7 47 57.4
Duzib150G1035 Durio zibethinus HOM05D002340 ORTHO05D003624 9.2e-06 54.3 40 65.0
Medtr6g088865 Medicago truncatula HOM05D002340 ORTHO05D003624 9.2e-06 54.3 58 50.0
QL02p040888 Quercus lobata HOM05D002340 ORTHO05D003624 9.2e-06 54.3 47 59.6
THA.LOC104813480 Tarenaya hassleriana HOM05D002340 ORTHO05D003624 9.2e-06 54.3 45 60.0


User provided reference genes

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