Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 7.6e-186 654.1 427 100.0
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 7.8e-114 414.8 427 61.8
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 2.1e-111 406.8 430 60.2
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.3e-105 387.5 451 53.4
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 5.6e-104 382.1 461 61.2
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.4e-102 377.5 461 61.6
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.3e-102 376.7 453 57.4
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 2.3e-102 376.7 450 51.8
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 4.0e-102 375.9 442 54.5
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.4e-101 372.5 434 58.5
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 7.5e-101 371.7 449 57.5
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 3.7e-100 369.4 459 56.2
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 3.7e-100 369.4 468 52.1
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.9e-99 367.1 437 52.4
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.1e-98 363.6 447 51.0
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.7e-98 363.2 452 60.6
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.3e-97 360.9 467 54.0
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 3.9e-97 359.4 467 54.8
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 5.1e-97 359.0 449 52.8
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.5e-96 357.5 458 52.8
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.5e-96 357.5 452 53.3
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.5e-96 357.5 452 53.3
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.2e-95 354.4 455 53.6
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.6e-95 352.8 438 50.9
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 8.1e-95 351.7 462 49.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.8e-94 348.6 463 55.7
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.0e-93 347.1 461 52.9
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 2.6e-93 346.7 459 50.3
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 4.4e-93 345.9 455 50.1
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 5.8e-93 345.5 460 56.5
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 9.9e-93 344.7 449 49.2
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 9.9e-93 344.7 457 49.0
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 1.3e-92 344.4 453 51.9
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.7e-92 344.0 453 53.4
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 2.2e-92 343.6 480 54.4
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 3.8e-92 342.8 445 48.8
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 4.9e-92 342.4 467 48.2
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 1.4e-91 340.9 478 54.4
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 9.2e-91 338.2 457 51.2
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.1e-90 337.0 466 54.5
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.1e-90 337.0 455 47.9
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.7e-90 336.7 474 47.7
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 3.5e-90 336.3 474 49.2
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 4.6e-90 335.9 427 50.6
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.7e-89 334.0 453 54.3
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.7e-89 334.0 451 50.6
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 3.0e-89 333.2 486 46.1
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 3.9e-89 332.8 503 50.9
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.1e-89 332.4 454 48.2
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 6.6e-89 332.0 452 54.0
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 8.7e-89 331.6 462 46.3
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 8.7e-89 331.6 486 45.9
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 8.7e-89 331.6 481 51.8
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 1.5e-88 330.9 457 51.6
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.5e-88 330.9 463 52.9
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.5e-88 330.9 460 51.3
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 1.5e-88 330.9 516 44.4
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 2.5e-88 330.1 474 48.9
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 2.5e-88 330.1 450 49.8
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 7.3e-88 328.6 452 51.1
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.3e-87 327.8 454 50.0
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.4e-86 324.3 456 46.1
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.4e-86 323.6 444 47.1
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 3.1e-86 323.2 458 46.3
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 3.1e-86 323.2 477 53.7
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 9.0e-86 321.6 451 53.9
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 9.0e-86 321.6 489 47.9
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 9.0e-86 321.6 486 50.6
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 9.0e-86 321.6 447 48.1
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.2e-85 321.2 474 51.1
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.2e-85 321.2 465 53.1
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.0e-85 320.5 449 50.3
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 7.6e-85 318.5 465 46.5
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.3e-84 317.8 505 44.6
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.7e-84 317.4 455 45.5
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.9e-84 316.6 446 49.8
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.8e-84 316.2 465 52.3
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 3.8e-84 316.2 450 51.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 2.4e-83 313.5 452 52.2
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.4e-83 313.5 454 51.1
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.2e-83 313.2 479 51.8
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 3.2e-83 313.2 477 53.7
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 4.2e-83 312.8 514 47.7
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 5.4e-83 312.4 452 49.1
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 7.1e-83 312.0 453 51.4
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.2e-82 311.2 471 45.9
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 2.1e-82 310.5 467 51.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 2.7e-82 310.1 470 55.1
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 3.5e-82 309.7 479 48.9
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 6.0e-82 308.9 440 54.3
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.0e-81 308.1 474 45.8
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.0e-81 308.1 476 45.6
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 3.0e-81 306.6 454 47.6
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 3.0e-81 306.6 483 44.9
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.9e-81 306.2 465 43.9
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 3.9e-81 306.2 496 45.2
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 3.9e-81 306.2 454 50.7
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 8.7e-81 305.1 424 46.9
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.5e-80 304.3 550 41.1
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 9.6e-80 301.6 460 43.7
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 2.1e-79 300.4 441 43.5
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 2.8e-79 300.1 441 44.9
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.8e-79 300.1 469 49.0
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 4.8e-79 299.3 445 48.3
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 8.1e-79 298.5 469 49.7
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 8.1e-79 298.5 478 47.1
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.1e-78 298.1 486 46.9
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 1.8e-78 297.4 434 45.6
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-78 297.4 434 45.6
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 1.8e-78 297.4 434 45.6
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.4e-78 297.0 443 47.2
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 4.0e-78 296.2 456 51.3
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 9.0e-78 295.0 480 47.3
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 2.6e-77 293.5 430 45.6
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 4.5e-77 292.7 428 50.5
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 7.6e-77 292.0 441 47.6
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 7.6e-77 292.0 429 50.1
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.8e-76 289.7 437 47.6
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 4.9e-76 289.3 481 50.7
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 8.4e-76 288.5 239 67.4
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.9e-75 287.3 468 47.9
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 3.2e-75 286.6 446 43.9
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 5.4e-75 285.8 417 47.5
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 6.0e-74 282.3 435 44.1
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 7.9e-74 282.0 433 45.3
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.3e-73 281.2 435 43.9
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.3e-73 281.2 460 54.8
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.0e-73 280.0 461 46.6
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 3.9e-73 279.6 429 47.3
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 3.9e-73 279.6 429 46.6
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 1.5e-72 277.7 477 46.5
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.5e-72 277.7 375 47.7
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.1e-71 273.9 446 46.6
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.8e-71 273.5 435 43.7
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 3.7e-71 273.1 238 63.9
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 4.8e-71 272.7 422 49.3
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.8e-70 270.8 477 45.9
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 5.3e-70 269.2 485 40.2
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.3e-68 264.6 448 46.0
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 2.3e-65 253.8 464 41.8
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 3.8e-60 236.5 429 44.1
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 3.8e-60 236.5 429 44.1
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 8.4e-60 235.3 462 40.3
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.1e-59 235.0 429 43.8
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 3.0e-57 226.9 425 45.4
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.0e-57 226.9 476 36.6
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.2e-55 220.7 504 38.1
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.7e-52 211.1 425 38.8
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.4e-49 201.4 438 39.5
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.3e-47 194.9 149 68.5
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.2e-47 194.1 344 43.0
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 2.2e-44 184.1 340 41.8
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 2.9e-44 183.7 477 43.4
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 1.2e-42 178.3 473 38.5
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.6e-42 176.8 468 34.2
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 2.6e-37 160.6 329 37.4
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 8.5e-36 155.6 176 51.7
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.8e-31 139.8 86 77.9
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 3.5e-29 133.7 105 69.5
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 2.7e-26 124.0 146 43.2
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.4e-22 111.7 91 67.0
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-19 101.7 89 59.6
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.5e-19 100.9 115 43.5
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.2e-16 92.0 86 62.8
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 4.4e-16 90.1 121 47.9
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 4.1e-14 83.6 86 59.3
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 5.4e-14 83.2 113 47.8
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 7.0e-14 82.8 175 30.3
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 9.1e-14 82.4 73 58.9
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-13 82.0 114 45.6
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-13 82.0 81 53.1
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.2e-13 82.0 114 45.6
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.0e-13 81.3 87 58.6
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 2.9e-12 77.4 141 40.4
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.6e-10 71.6 91 41.8
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 2.3e-09 67.8 103 35.9
CSS0029378 Camellia sinensis var. sinensis HOM05D002258 ORTHO05D002539 4.1e-06 57.0 155 34.8
CSS0036996 Camellia sinensis var. sinensis HOM05D002258 ORTHO05D002539 4.1e-06 57.0 155 34.8
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.2e-06 55.8 34 82.4


User provided reference genes

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