Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0039081 Helianthus annuus HOM05D001061 ORTHO05D036360 3.0e-44 181.4 90 100.0
HanXRQChr10g0293111 Helianthus annuus HOM05D001061 ORTHO05D036360 3.0e-44 181.4 90 100.0
ECA246G2868 Erigeron canadensis HOM05D001061 ORTHO05D006881 9.0e-12 73.6 80 53.8
Lsat_1_v5_gn_5_25080 Lactuca sativa HOM05D001061 ORTHO05D006881 1.5e-11 72.8 82 52.4
HanXRQChr05g0153891 Helianthus annuus HOM05D001061 ORTHO05D006881 2.0e-11 72.4 79 53.2
PSO063G4650 Papaver somniferum HOM05D001061 ORTHO05D006881 4.4e-11 71.2 76 56.6
PSO782G4375 Papaver somniferum HOM05D001061 ORTHO05D006881 4.4e-11 71.2 76 56.6
Lj5C145G2 Lonicera japonica HOM05D001061 ORTHO05D006881 7.6e-11 70.5 76 55.3
Haze_18615 Corylus avellana HOM05D001061 ORTHO05D006881 9.9e-11 70.1 86 51.2
CSS0050177 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006881 1.3e-10 69.7 76 53.9
Actinidia31031 Actinidia chinensis HOM05D001061 ORTHO05D006881 1.7e-10 69.3 76 52.6
QL10p022714 Quercus lobata HOM05D001061 ORTHO05D006881 1.7e-10 69.3 86 50.0
Atru.chr9.755 Acer truncatum HOM05D001061 ORTHO05D006881 2.9e-10 68.6 75 54.7
Duzib205G1584 Durio zibethinus HOM05D001061 ORTHO05D006881 2.9e-10 68.6 74 55.4
vmacro17676 Vaccinium macrocarpon HOM05D001061 ORTHO05D006881 2.9e-10 68.6 76 51.3
Hma1.2p1_0340F.1_g129890 Hydrangea macrophylla HOM05D001061 ORTHO05D006881 3.8e-10 68.2 75 54.7
Dinv36905 Davidia involucrata HOM05D001061 ORTHO05D006881 4.9e-10 67.8 76 52.6
Lalb_Chr12g0197581 Lupinus albus HOM05D001061 ORTHO05D036360 4.9e-10 67.8 51 66.7
Nn4g23718 Nelumbo nucifera HOM05D001061 ORTHO05D006881 4.9e-10 67.8 76 52.6
Thecc.03G028100 Theobroma cacao HOM05D001061 ORTHO05D006881 4.9e-10 67.8 74 54.1
CiPaw.15G126900 Carya illinoinensis HOM05D001061 ORTHO05D006881 6.4e-10 67.4 86 50.0
Rhsim08G0137000 Rhododendron simsii HOM05D001061 ORTHO05D006881 6.4e-10 67.4 70 54.3
TWI15G0827 Tripterygium wilfordii HOM05D001061 ORTHO05D006881 6.4e-10 67.4 76 53.9
COL.COLO4_22718 Corchorus olitorius HOM05D001061 ORTHO05D006881 8.4e-10 67.0 70 57.1
Peaxi162Scf00081g02227 Petunia axillaris HOM05D002283 ORTHO05D008228 8.4e-10 67.0 59 62.7
GSVIVG01008235001 Vitis vinifera HOM05D001061 ORTHO05D006881 1.4e-09 66.2 70 55.7
Aa31LG8G5400 Aethionema arabicum HOM05D001061 ORTHO05D006881 1.9e-09 65.9 79 54.4
Phvul.003G177100 Phaseolus vulgaris HOM05D001061 ORTHO05D006881 1.9e-09 65.9 63 58.7
Manes.01G020600 Manihot esculenta HOM05D001061 ORTHO05D006881 2.4e-09 65.5 71 57.7
Medtr4g111945 Medicago truncatula HOM05D001061 ORTHO05D006881 2.4e-09 65.5 76 52.6
Potri.012G060000 Populus trichocarpa HOM05D001061 ORTHO05D006881 2.4e-09 65.5 76 51.3
Eucgr.B00700 Eucalyptus grandis HOM05D001061 ORTHO05D006881 3.2e-09 65.1 70 57.1
Sabra12G0043000 Salix brachista HOM05D001061 ORTHO05D006881 3.2e-09 65.1 63 58.7
AL3G31850 Arabidopsis lyrata HOM05D001061 ORTHO05D006881 4.2e-09 64.7 82 53.7
AT3G18524 Arabidopsis thaliana HOM05D001061 ORTHO05D006881 4.2e-09 64.7 82 53.7
Carub.0003s1832 Capsella rubella HOM05D001061 ORTHO05D006881 4.2e-09 64.7 82 53.7
CARHR093910 Cardamine hirsuta HOM05D001061 ORTHO05D006881 4.2e-09 64.7 82 53.7
Ciclev10018746m.g Citrus clementina HOM05D001061 ORTHO05D006881 4.2e-09 64.7 70 54.3
Thhalv10020006m.g Eutrema salsugineum HOM05D001061 ORTHO05D006881 4.2e-09 64.7 72 56.9
Glyma.17G121400 Glycine max HOM05D001061 ORTHO05D006881 4.2e-09 64.7 76 51.3
PGR083G2045 Punica granatum HOM05D001061 ORTHO05D006881 4.2e-09 64.7 63 60.3
ATR0681G268 Amborella trichopoda HOM05D001061 ORTHO05D006881 5.4e-09 64.3 61 59.0
Aqoxy3G03903 Aquilegia oxysepala HOM05D001061 ORTHO05D006881 5.4e-09 64.3 76 48.7
arahy.Tifrunner.gnm1.ann1.ERX1RE Arachis hypogaea HOM05D001061 ORTHO05D006881 5.4e-09 64.3 63 58.7
arahy.Tifrunner.gnm1.ann1.J2PRY0 Arachis hypogaea HOM05D001061 ORTHO05D006881 5.4e-09 64.3 63 58.7
Ca_02537_v3 Cicer arietinum L. HOM05D001061 ORTHO05D006881 5.4e-09 64.3 63 58.7
Gohir.A09G046500 Gossypium hirsutum HOM05D001061 ORTHO05D006881 5.4e-09 64.3 69 56.5
Gorai.006G063300 Gossypium raimondii HOM05D001061 ORTHO05D006881 5.4e-09 64.3 69 56.5
Psat4g043480 Pisum sativum HOM05D001061 ORTHO05D006881 5.4e-09 64.3 63 58.7
TPR.G26764 Trifolium pratense HOM05D001061 ORTHO05D006881 5.4e-09 64.3 63 58.7
Solyc06g069230.3 Solanum lycopersicum HOM05D001061 ORTHO05D006881 7.1e-09 63.9 61 59.0
Sopen06g026490 Solanum pennellii HOM05D001061 ORTHO05D006881 7.1e-09 63.9 61 59.0
TAR622G0276 Trochodendron aralioides HOM05D001061 ORTHO05D006881 7.1e-09 63.9 76 51.3
BcaB04g18987 Brassica carinata HOM05D001061 ORTHO05D006881 9.3e-09 63.5 72 56.9
A03p40700 Brassica napus HOM05D001061 ORTHO05D006881 9.3e-09 63.5 72 56.9
C03p49490 Brassica napus HOM05D001061 ORTHO05D006881 9.3e-09 63.5 72 56.9
BolC3t17247H Brassica oleracea HOM05D001061 ORTHO05D006881 9.3e-09 63.5 72 56.9
BraA03t13227Z Brassica rapa HOM05D001061 ORTHO05D006881 9.3e-09 63.5 72 56.9
AUR62032190 Chenopodium quinoa HOM05D001061 ORTHO05D006881 9.3e-09 63.5 63 58.7
AUR62036955 Chenopodium quinoa HOM05D001061 ORTHO05D006881 9.3e-09 63.5 63 58.7
AUR62043676 Chenopodium quinoa HOM05D001061 ORTHO05D006881 9.3e-09 63.5 63 58.7
MSTRG.11316 Avicennia marina HOM05D001061 ORTHO05D006881 1.2e-08 63.2 70 54.3
FAN08G1716 Fragaria x ananassa HOM05D001061 ORTHO05D006881 1.2e-08 63.2 76 51.3
Prupe.5G217300 Prunus persica HOM05D001061 ORTHO05D006881 1.2e-08 63.2 70 54.3
Sc10g0009570 Simmondsia chinensis HOM05D001061 ORTHO05D006881 1.2e-08 63.2 74 54.1
VMungo1215G1249 Vigna mungo HOM05D001061 ORTHO05D006881 1.2e-08 63.2 63 57.1
Zm00001eb326520 Zea mays HOM05D001061 ORTHO05D006881 1.2e-08 63.2 63 57.1
Peaxi162Scf00013g00939 Petunia axillaris HOM05D001061 ORTHO05D006881 1.6e-08 62.8 73 53.4
Sp3g16620 Schrenkiella parvula HOM05D001061 ORTHO05D006881 1.6e-08 62.8 48 70.8
Cpa.g.sc549.4 Carica papaya HOM05D001061 ORTHO05D006881 2.1e-08 62.4 70 54.3
CDE10G0399 Ceratophyllum demersum HOM05D001061 ORTHO05D006881 2.1e-08 62.4 63 57.1
FAN18G1105 Fragaria x ananassa HOM05D001061 ORTHO05D006881 2.1e-08 62.4 70 54.3
FAN18G1805 Fragaria x ananassa HOM05D001061 ORTHO05D006881 2.1e-08 62.4 70 54.3
Lj4g0007114 Lotus japonicus HOM05D001061 ORTHO05D006881 2.1e-08 62.4 39 82.1
Nitab4.5_0008699g0020 Nicotiana tabacum HOM05D001061 ORTHO05D006881 2.1e-08 62.4 46 71.7
RcHm_v2.0_Chr7g0184631 Rosa chinensis HOM05D001061 ORTHO05D006881 2.1e-08 62.4 76 50.0
CANSAT80G1355 Cannabis sativa HOM05D001061 ORTHO05D006881 2.7e-08 62.0 46 69.6
Cc04_g07520 Coffea canephora HOM05D001061 ORTHO05D006881 2.7e-08 62.0 63 57.1
MELO3C017287.2 Cucumis melo HOM05D001061 ORTHO05D006881 2.7e-08 62.0 39 82.1
CsaV3_1G003630 Cucumis sativus L. HOM05D001061 ORTHO05D006881 2.7e-08 62.0 39 82.1
Sed0003655 Sechium edule HOM05D001061 ORTHO05D006881 2.7e-08 62.0 39 82.1
Lalb_Chr13g0302331 Lupinus albus HOM05D001061 ORTHO05D006881 3.5e-08 61.6 63 55.6
Nitab4.5_0001432g0030 Nicotiana tabacum HOM05D001061 ORTHO05D006881 3.5e-08 61.6 46 71.7
Hund09999 Selenicereus undatus HOM05D001061 ORTHO05D006881 3.5e-08 61.6 51 66.7
EL10Ac5g11250 Beta vulgaris HOM05D001061 ORTHO05D006881 4.6e-08 61.2 63 57.1
BcaC01g03695 Brassica carinata HOM05D001061 ORTHO05D006881 4.6e-08 61.2 72 55.6
DCAR_023182 Daucus carota HOM05D001061 ORTHO05D006881 4.6e-08 61.2 63 58.7
PGSC0003DMG400004071 Solanum tuberosum HOM05D001061 ORTHO05D006881 6.0e-08 60.8 48 68.8
ClCG06G015030 Citrullus lanatus HOM05D001061 ORTHO05D006881 7.8e-08 60.5 39 79.5
MD06G1211200 Malus domestica HOM05D001061 ORTHO05D006881 7.8e-08 60.5 63 57.1
MD14G1221900 Malus domestica HOM05D001061 ORTHO05D006881 7.8e-08 60.5 63 57.1
HPP92_018512 Vanilla planifolia HOM05D001061 ORTHO05D006881 7.8e-08 60.5 74 45.9
Os05g0274200 Oryza sativa ssp. japonica HOM05D001061 ORTHO05D006881 1.0e-07 60.1 63 55.6
SGA_v2.0_scaffold19G08803 Striga asiatica HOM05D001061 ORTHO05D006881 2.3e-07 58.9 74 47.3
CAN.G587.78 Capsicum annuum HOM05D001061 ORTHO05D006881 3.0e-07 58.5 48 66.7
Pp3c22_850 Physcomitrium patens HOM05D001061 ORTHO05D006881 3.9e-07 58.2 63 54.0
SEGI_08598 Sequoiadendron giganteum HOM05D001061 ORTHO05D006881 3.9e-07 58.2 39 76.9
Mapoly0120s0004 Marchantia polymorpha HOM05D001061 ORTHO05D006881 5.1e-07 57.8 48 66.7
Migut.I00396 Erythranthe guttata HOM05D001061 ORTHO05D006881 6.6e-07 57.4 48 66.7
unitig_61.g26195 Utricularia gibba HOM05D001061 ORTHO05D006881 6.6e-07 57.4 39 74.4
BcaC08g43436 Brassica carinata HOM05D001061 ORTHO05D006881 8.7e-07 57.0 45 66.7
C06p08040 Brassica napus HOM05D001061 ORTHO05D006881 8.7e-07 57.0 45 66.7
SMO347G0538 Selaginella moellendorffii HOM05D001061 ORTHO05D006881 5.6e-06 54.3 48 60.4
CDE10G1294 Ceratophyllum demersum HOM05D000466 ORTHO05D000331 7.3e-06 53.9 46 63.0


User provided reference genes

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