Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.3e-260 902.5 447 100.0
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 1.9e-219 765.8 450 84.0
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.6e-215 752.7 455 80.9
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 1.3e-199 699.9 460 74.6
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 1.7e-196 689.5 460 73.9
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 2.5e-195 685.6 460 73.3
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 3.2e-195 685.3 460 72.2
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 6.7e-193 677.6 460 73.7
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.0e-192 676.0 430 76.0
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 2.6e-192 675.6 451 73.4
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 9.7e-192 673.7 458 71.4
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.2e-188 662.5 462 71.6
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 5.0e-188 661.4 460 70.2
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 8.5e-188 660.6 460 71.7
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.5e-187 659.8 460 71.3
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.5e-187 659.1 460 70.7
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 4.2e-187 658.3 460 70.9
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.2e-187 658.3 460 70.7
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 7.2e-187 657.5 458 71.2
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 7.2e-187 657.5 460 70.7
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 7.2e-187 657.5 460 71.7
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 7.2e-187 657.5 460 70.9
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 2.1e-186 656.0 437 73.2
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 2.1e-186 656.0 460 70.0
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.1e-186 654.4 460 70.2
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 8.8e-185 650.6 456 70.4
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.6e-184 649.0 460 70.9
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 4.4e-184 648.3 460 69.3
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 9.7e-184 647.1 458 70.1
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 1.3e-183 646.7 460 69.1
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.2e-183 646.0 460 69.3
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 6.3e-183 644.4 439 71.5
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 1.1e-182 643.7 459 69.5
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 1.1e-182 643.7 459 69.3
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 1.4e-182 643.3 459 69.7
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 7.0e-182 641.0 418 75.1
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 1.2e-181 640.2 456 69.1
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 1.2e-181 640.2 459 69.1
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 3.5e-181 638.6 459 69.1
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 3.5e-181 638.6 460 68.0
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 4.5e-181 638.3 433 72.1
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 4.5e-181 638.3 495 65.9
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 7.7e-181 637.5 460 67.8
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 7.7e-181 637.5 458 70.3
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 3.8e-180 635.2 460 70.0
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 5.0e-180 634.8 463 69.8
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 6.5e-180 634.4 465 68.4
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 1.9e-179 632.9 448 69.0
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 5.5e-179 631.3 461 68.8
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 2.7e-178 629.0 449 68.4
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 2.7e-178 629.0 460 67.0
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 3.6e-178 628.6 460 67.0
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 4.7e-178 628.2 453 69.1
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 1.4e-177 626.7 460 66.7
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 1.4e-177 626.7 449 68.8
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 6.8e-177 624.4 447 68.5
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 6.8e-177 624.4 514 62.5
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 8.8e-177 624.0 459 66.4
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.2e-176 623.6 440 69.1
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 7.5e-176 620.9 449 67.9
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 1.3e-175 620.2 456 66.2
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 3.7e-175 618.6 458 67.9
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 3.1e-174 615.5 448 66.7
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 4.1e-174 615.1 449 67.7
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 4.1e-174 615.1 449 67.0
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.2e-173 613.6 459 65.4
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 1.2e-173 613.6 448 67.0
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 8.6e-172 607.4 415 73.0
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 1.1e-171 607.1 463 67.6
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 1.9e-171 606.3 451 66.1
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 7.2e-171 604.4 456 65.4
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 1.6e-170 603.2 459 66.0
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.0e-169 600.5 460 66.1
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.8e-169 599.7 457 66.3
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 2.3e-169 599.4 457 65.0
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 7.5e-168 594.3 411 72.5
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 9.8e-168 594.0 440 69.1
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 9.8e-168 594.0 409 69.7
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 2.2e-167 592.8 461 65.5
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 6.3e-167 591.3 453 63.6
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.4e-166 589.3 385 76.1
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 7.0e-166 587.8 458 62.2
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 2.3e-164 582.8 456 63.6
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 5.0e-164 581.6 459 62.5
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 6.6e-164 581.3 456 63.6
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 1.9e-163 579.7 457 64.6
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 3.3e-163 578.9 457 63.2
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.6e-162 576.6 456 63.6
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.8e-162 575.9 457 61.7
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 8.3e-159 564.3 456 63.4
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 7.0e-158 561.2 450 62.9
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 1.6e-157 560.1 488 60.2
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 2.0e-157 559.7 385 73.5
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 5.0e-156 555.1 399 67.7
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 2.1e-154 549.7 451 62.1
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.5e-144 516.9 373 67.3
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 4.0e-129 465.7 462 50.4
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 9.9e-128 461.1 463 50.5
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 3.3e-123 446.0 375 61.3
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.3e-119 434.1 448 48.7
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 7.9e-117 424.9 455 47.9
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 3.9e-116 422.5 340 60.9
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 1.1e-115 421.0 461 52.9
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.4e-113 414.1 279 71.7
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 1.9e-102 377.1 316 61.1
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 5.7e-99 365.5 514 40.9
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.0e-96 357.1 376 48.4
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 8.2e-90 335.1 455 42.2
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 2.7e-77 293.5 243 64.6
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 4.1e-73 279.6 207 63.3
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.0e-68 265.0 437 37.1
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.7e-66 257.7 224 57.1
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 4.5e-64 249.6 191 65.4
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 5.8e-43 179.5 107 82.2
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 2.4e-41 174.1 447 30.4
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 3.5e-40 170.2 282 36.9
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 2.0e-19 101.3 123 40.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.2e-11 75.5 315 23.2
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 2.6e-11 74.3 326 24.8
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 3.4e-11 73.9 428 24.1
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.7e-10 71.6 347 21.3
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 1.9e-09 68.2 320 23.8
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 9.3e-09 65.9 313 23.3
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 1.2e-08 65.5 136 27.9
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 2.1e-08 64.7 327 20.5
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 1.0e-07 62.4 327 22.9
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.3e-07 62.0 117 28.2
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.3e-07 62.0 117 28.2
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 2.3e-07 61.2 132 27.3
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 3.0e-07 60.8 132 27.3
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 3.0e-07 60.8 132 27.3
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 3.0e-07 60.8 117 28.2
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 3.0e-07 60.8 127 26.8
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 5.1e-07 60.1 117 27.4
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 5.1e-07 60.1 134 26.9
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 6.6e-07 59.7 117 27.4
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 6.6e-07 59.7 132 28.0
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 1.1e-06 58.9 314 21.3
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 1.5e-06 58.5 214 23.4
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 1.5e-06 58.5 214 23.4
Lsat_1_v5_gn_7_78061 Lactuca sativa HOM05D000347 ORTHO05D001997 3.3e-06 57.4 140 27.9
Lj5A133T97 Lonicera japonica HOM05D000464 ORTHO05D006292 3.3e-06 57.4 121 28.1
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 5.6e-06 56.6 126 27.0
Sc25g0005650 Simmondsia chinensis HOM05D000997 ORTHO05D000828 5.6e-06 56.6 103 34.0
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 7.3e-06 56.2 114 28.1
PGSC0003DMG402015159 Solanum tuberosum HOM05D000464 ORTHO05D006292 7.3e-06 56.2 326 23.6
Lj3g0012644 Lotus japonicus HOM05D000526 ORTHO05D000956 9.6e-06 55.8 284 22.9
Manes.04G075900 Manihot esculenta HOM05D000347 ORTHO05D001997 9.6e-06 55.8 120 26.7


User provided reference genes

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