Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 0.0e+00 1275.0 650 100.0
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 0.0e+00 1241.5 651 97.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 6.2e-248 860.9 669 68.5
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.8e-247 859.4 675 66.5
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.0e-246 855.9 646 70.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.1e-231 807.0 674 65.3
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.2e-216 756.1 646 61.8
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.3e-194 682.9 672 56.1
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.2e-190 670.6 703 53.3
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 8.3e-184 647.9 716 51.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.9e-183 646.7 662 52.4
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.9e-181 639.0 715 51.5
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 3.7e-176 622.5 711 51.1
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.3e-173 613.2 680 51.2
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.1e-172 610.9 693 49.6
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.3e-172 609.4 710 48.7
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 3.3e-172 609.4 654 52.4
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.4e-170 604.0 688 50.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.3e-170 603.2 710 48.0
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 4.0e-170 602.4 648 52.2
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.5e-169 600.5 646 52.3
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.5e-169 600.5 725 48.7
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.5e-169 600.5 725 48.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.6e-169 599.7 700 48.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.6e-169 599.7 689 49.5
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.2e-168 596.7 692 48.4
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.4e-167 594.0 648 51.5
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.1e-167 592.4 722 49.0
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 7.1e-167 591.7 676 49.0
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 3.9e-165 585.9 722 46.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 4.3e-164 582.4 735 46.8
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.1e-162 577.8 736 44.7
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.4e-162 577.4 699 47.2
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 5.2e-162 575.5 678 47.3
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 5.2e-162 575.5 705 47.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.5e-161 573.9 727 46.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.4e-161 572.8 661 49.0
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.9e-160 569.7 717 46.0
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 2.9e-160 569.7 725 45.5
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 7.1e-159 565.1 719 46.9
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.2e-159 564.7 654 48.3
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 4.6e-158 562.4 688 45.9
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 5.1e-157 558.9 707 46.0
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.9e-156 557.0 719 45.5
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 4.3e-156 555.8 719 45.3
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 5.6e-156 555.4 729 45.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.8e-155 553.1 698 47.3
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 3.6e-155 552.7 695 45.8
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.8e-153 545.4 599 50.4
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 7.6e-153 545.0 829 40.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.9e-153 544.7 700 47.1
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 8.4e-152 541.6 646 47.2
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.1e-151 541.2 724 45.0
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.9e-151 540.4 700 47.0
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.4e-151 540.0 677 45.1
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.4e-151 540.0 646 48.0
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 9.3e-151 538.1 682 45.9
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 9.3e-151 538.1 650 46.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.2e-150 537.7 700 46.9
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.6e-150 537.3 689 45.1
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.6e-150 537.3 645 47.4
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.1e-150 537.0 656 46.6
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.0e-149 533.1 624 47.6
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 8.7e-149 531.6 718 43.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.5e-148 530.0 647 47.3
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 3.3e-148 529.6 651 46.9
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.8e-147 526.6 718 42.6
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 8.1e-147 525.0 718 42.9
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.4e-146 524.2 722 43.6
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.8e-146 523.9 731 42.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.9e-146 521.9 720 44.6
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.1e-143 514.6 678 46.9
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.2e-143 513.1 650 44.5
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.3e-141 507.7 677 44.3
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.4e-138 497.7 705 42.8
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.5e-137 492.7 691 43.6
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.9e-135 487.3 655 42.7
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.9e-135 487.3 644 43.0
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.1e-134 483.8 742 40.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 6.0e-134 482.3 637 43.5
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 7.9e-134 481.9 403 60.0
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.3e-133 481.1 699 43.2
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 3.3e-132 476.5 692 42.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 7.4e-132 475.3 704 41.1
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.3e-131 474.6 658 45.1
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 2.1e-131 473.8 513 50.7
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 6.9e-130 468.8 407 59.0
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 3.8e-128 463.0 645 41.7
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.2e-127 459.5 664 40.2
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.9e-125 453.0 596 44.8
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 9.7e-124 448.4 659 43.4
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.3e-123 448.0 696 40.7
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 4.8e-123 446.0 659 43.2
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.8e-122 444.1 483 51.1
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.1e-122 443.4 666 42.0
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 4.1e-122 443.0 664 42.6
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 6.9e-122 442.2 679 41.8
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 6.9e-122 442.2 669 41.4
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.2e-121 441.4 683 41.0
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.5e-121 441.0 657 42.8
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.0e-121 440.7 662 41.8
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.6e-118 431.0 626 42.3
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.6e-118 431.0 533 47.3
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 6.1e-118 429.1 630 41.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 3.0e-117 426.8 514 48.4
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 6.3e-115 419.1 698 36.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.8e-114 417.5 583 42.4
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.4e-114 417.2 633 40.3
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.5e-105 386.3 463 48.4
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.0e-101 373.6 538 41.8
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 3.7e-99 366.7 653 37.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 2.1e-94 350.9 635 35.1
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 7.5e-92 342.4 409 48.4
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.4e-90 336.3 369 49.3
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.5e-89 333.2 473 42.5
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.6e-86 323.6 698 31.5
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 8.8e-85 318.9 705 32.2
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 7.7e-81 305.8 315 52.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.0e-73 281.2 366 43.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.5e-71 275.0 392 42.6
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.7e-70 270.0 512 36.7
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.4e-69 268.5 672 29.2
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 3.2e-66 257.3 362 42.0
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.8e-61 241.5 714 30.1
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.9e-58 231.5 170 64.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 4.6e-57 226.9 363 39.9
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.2e-54 218.8 593 27.8
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-50 204.9 622 26.2
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.4e-42 178.7 450 32.9
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.9e-42 178.3 217 48.4
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.4e-42 177.9 141 59.6
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.1e-41 174.9 237 40.9
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 3.3e-39 167.5 470 30.0
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-34 150.2 578 25.3
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.3e-31 141.0 243 33.3
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.2e-28 132.5 98 63.3
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.3e-27 129.0 98 62.2
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.7e-27 128.6 224 34.8
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 2.2e-27 128.3 179 40.8
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.4e-27 126.3 290 32.8
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 8.1e-22 109.8 147 38.8
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.4e-21 108.2 106 50.0
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.0e-21 107.5 185 35.7
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 8.7e-16 89.7 151 39.1
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-15 88.6 195 27.7
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 3.3e-15 87.8 144 40.3
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.4e-13 81.6 196 28.1
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 6.5e-11 73.6 56 55.4
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.4e-10 72.4 61 62.3
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.9e-10 72.0 181 28.7
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.2e-10 71.2 64 62.5
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.2e-10 71.2 310 23.2
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.7e-09 68.2 75 49.3
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 4.3e-07 60.8 202 28.2
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 5.7e-07 60.5 114 29.8
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 7.4e-07 60.1 48 58.3


User provided reference genes

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