Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0249481 Helianthus annuus HOM05D003289 ORTHO05D004594 2.4e-292 1008.1 500 100.0
HanXRQChr05g0145141 Helianthus annuus HOM05D003289 ORTHO05D004594 2.2e-240 835.5 508 81.3
Lsat_1_v5_gn_6_39380 Lactuca sativa HOM05D003289 ORTHO05D004594 1.2e-203 713.4 537 68.3
Lsat_1_v5_gn_6_39840 Lactuca sativa HOM05D003289 ORTHO05D004594 3.1e-202 708.8 534 68.7
CSS0049320 Camellia sinensis var. sinensis HOM05D003289 ORTHO05D004594 1.7e-192 676.4 555 63.1
Actinidia07230 Actinidia chinensis HOM05D003289 ORTHO05D004594 5.1e-189 664.8 557 61.2
GSVIVG01031365001 Vitis vinifera HOM05D003289 ORTHO05D004594 2.1e-187 659.4 543 62.1
TAR636G3131 Trochodendron aralioides HOM05D003289 ORTHO05D004594 1.4e-186 656.8 551 61.0
Cc01_g09530 Coffea canephora HOM05D003289 ORTHO05D004594 1.4e-183 646.7 555 61.1
Ca_19261_v3 Cicer arietinum L. HOM05D003289 ORTHO05D004594 4.6e-182 641.7 544 59.2
QL01p013239 Quercus lobata HOM05D003289 ORTHO05D004594 1.1e-180 637.1 544 58.8
Peaxi162Scf00544g00919 Petunia axillaris HOM05D003289 ORTHO05D004594 7.3e-180 634.4 552 58.3
SGA_v2.0_scaffold102G29919 Striga asiatica HOM05D003289 ORTHO05D004594 3.6e-179 632.1 556 58.3
CANSAT54G1671 Cannabis sativa HOM05D003289 ORTHO05D004594 4.7e-179 631.7 544 59.0
MSTRG.17714 Avicennia marina HOM05D003289 ORTHO05D004594 6.2e-179 631.3 556 58.3
Sopen11g026820 Solanum pennellii HOM05D003289 ORTHO05D004594 6.2e-179 631.3 555 58.2
Atru.chr3.3336 Acer truncatum HOM05D003289 ORTHO05D004594 1.1e-178 630.6 544 58.6
Lj2C988G5 Lonicera japonica HOM05D003289 ORTHO05D004594 1.4e-178 630.2 558 58.8
Eucgr.B03882 Eucalyptus grandis HOM05D003289 ORTHO05D004594 1.8e-178 629.8 537 58.8
Solyc11g067140.2 Solanum lycopersicum HOM05D003289 ORTHO05D004594 2.4e-178 629.4 555 57.8
Potri.004G185700 Populus trichocarpa HOM05D003289 ORTHO05D004594 5.2e-178 628.2 552 57.6
Nitab4.5_0003532g0050 Nicotiana tabacum HOM05D003289 ORTHO05D004594 1.2e-177 627.1 555 58.0
Sabra04G0125000 Salix brachista HOM05D003289 ORTHO05D004594 1.2e-177 627.1 553 57.3
Thecc.09G288000 Theobroma cacao HOM05D003289 ORTHO05D004594 3.4e-177 625.5 542 58.3
Nn2g14071 Nelumbo nucifera HOM05D003289 ORTHO05D004594 4.4e-177 625.2 551 59.5
Migut.N02501 Erythranthe guttata HOM05D003289 ORTHO05D004594 1.3e-176 623.6 556 58.3
Zm00001eb241860 Zea mays HOM05D003289 ORTHO05D004594 2.9e-176 622.5 538 58.0
CAN.G644.7 Capsicum annuum HOM05D003289 ORTHO05D004594 3.8e-176 622.1 556 56.8
Lj3g0000987 Lotus japonicus HOM05D003289 ORTHO05D004594 3.8e-176 622.1 541 58.4
Ciclev10027662m.g Citrus clementina HOM05D003289 ORTHO05D004594 6.4e-176 621.3 542 57.7
Psat7g153200 Pisum sativum HOM05D003289 ORTHO05D004594 8.4e-176 620.9 541 56.4
Prupe.6G124200 Prunus persica HOM05D003289 ORTHO05D004594 1.9e-175 619.8 541 57.5
Glyma.12G087000 Glycine max HOM05D003289 ORTHO05D004594 3.2e-175 619.0 543 57.1
SalBow3G0618 Salvia bowleyana HOM05D003289 ORTHO05D004594 3.2e-175 619.0 552 58.5
Gohir.D05G085400 Gossypium hirsutum HOM05D003289 ORTHO05D004594 9.2e-175 617.5 539 57.9
Gohir.A05G082500 Gossypium hirsutum HOM05D003289 ORTHO05D004594 1.2e-174 617.1 539 57.9
Lalb_Chr19g0136661 Lupinus albus HOM05D003289 ORTHO05D004594 1.6e-174 616.7 544 56.8
Medtr4g054980 Medicago truncatula HOM05D003289 ORTHO05D004594 2.1e-174 616.3 545 56.5
Duzib168G1226 Durio zibethinus HOM05D003289 ORTHO05D004594 3.5e-174 615.5 544 57.0
PSO384G0460 Papaver somniferum HOM05D003289 ORTHO05D004594 6.0e-174 614.8 555 57.1
PSO425G0048 Papaver somniferum HOM05D003289 ORTHO05D004594 7.8e-174 614.4 555 56.9
VMungo1127G1826 Vigna mungo HOM05D003289 ORTHO05D004594 7.8e-174 614.4 539 57.9
Gorai.009G087200 Gossypium raimondii HOM05D003289 ORTHO05D004594 1.0e-173 614.0 539 57.7
Os02g0511901 Oryza sativa ssp. japonica HOM05D003289 ORTHO05D004594 6.6e-173 611.3 544 56.8
Phvul.011G091900 Phaseolus vulgaris HOM05D003289 ORTHO05D004594 1.1e-172 610.5 540 56.5
FvH4_3g29570 Fragaria vesca HOM05D003289 ORTHO05D004594 2.5e-172 609.4 546 57.7
Aqoxy2G01337 Aquilegia oxysepala HOM05D003289 ORTHO05D004594 9.6e-172 607.4 544 56.8
FAN11G3202 Fragaria x ananassa HOM05D003289 ORTHO05D004594 3.6e-171 605.5 546 57.5
CsaV3_6G014890 Cucumis sativus L. HOM05D003289 ORTHO05D004594 4.7e-171 605.1 542 55.5
Haze_23425 Corylus avellana HOM05D003289 ORTHO05D004594 8.1e-171 604.4 573 54.5
RcHm_v2.0_Chr5g0054631 Rosa chinensis HOM05D003289 ORTHO05D004594 1.4e-170 603.6 546 57.7
MELO3C021434.2 Cucumis melo HOM05D003289 ORTHO05D004594 9.0e-170 600.9 540 55.9
COL.COLO4_19937 Corchorus olitorius HOM05D003289 ORTHO05D004594 2.0e-169 599.7 566 55.1
MD11G1160700 Malus domestica HOM05D003289 ORTHO05D004594 2.0e-169 599.7 543 56.2
AUR62039240 Chenopodium quinoa HOM05D003289 ORTHO05D004594 7.6e-169 597.8 556 54.7
PGR102G2277 Punica granatum HOM05D003289 ORTHO05D004594 7.6e-169 597.8 544 55.0
Hund20868 Selenicereus undatus HOM05D003289 ORTHO05D004594 9.9e-169 597.4 556 56.1
FAN16G3075 Fragaria x ananassa HOM05D003289 ORTHO05D004594 2.2e-168 596.3 546 56.2
ClCG02G022050 Citrullus lanatus HOM05D003289 ORTHO05D004594 2.9e-168 595.9 573 52.9
HPP92_025278 Vanilla planifolia HOM05D003289 ORTHO05D004594 1.4e-167 593.6 545 56.7
TPR.G15595 Trifolium pratense HOM05D003289 ORTHO05D004594 4.2e-167 592.0 639 49.6
MD03G1139200 Malus domestica HOM05D003289 ORTHO05D004594 5.4e-167 591.7 545 55.4
EL10Ac7g15792 Beta vulgaris HOM05D003289 ORTHO05D004594 9.3e-167 590.9 556 55.4
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 6.0e-166 588.2 475 64.6
SEGI_26591 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 6.0e-166 588.2 557 55.7
Rhsim13G0107600 Rhododendron simsii HOM05D003289 ORTHO05D004594 1.7e-165 586.6 557 55.7
THA.LOC104826411 Tarenaya hassleriana HOM05D003289 ORTHO05D004594 3.3e-164 582.4 538 55.9
Sed0008797 Sechium edule HOM05D003289 ORTHO05D004594 1.3e-163 580.5 542 54.6
vmacro03295 Vaccinium macrocarpon HOM05D003289 ORTHO05D004594 3.6e-163 578.9 549 55.4
unitig_22.g6642 Utricularia gibba HOM05D003289 ORTHO05D004594 8.1e-163 577.8 546 55.5
arahy.Tifrunner.gnm1.ann1.B2Y78K Arachis hypogaea HOM05D003289 ORTHO05D004594 1.1e-156 557.4 640 48.1
SGA_v2.0_scaffold424G51468 Striga asiatica HOM05D003289 ORTHO05D004594 3.1e-154 549.3 556 53.1
arahy.Tifrunner.gnm1.ann1.F25EMM Arachis hypogaea HOM05D003289 ORTHO05D004594 4.9e-152 542.0 543 53.4
DCAR_012181 Daucus carota HOM05D003289 ORTHO05D004594 8.4e-152 541.2 490 58.6
AUR62009793 Chenopodium quinoa HOM05D003289 ORTHO05D004594 1.1e-148 530.8 495 55.6
Pp3c13_4500 Physcomitrium patens HOM05D003289 ORTHO05D004594 2.1e-147 526.6 557 50.1
SHI18830 Sapria himalayana HOM05D003289 ORTHO05D004594 1.4e-146 523.9 521 52.0
ClCG09G020580 Citrullus lanatus HOM05D003289 ORTHO05D004594 3.4e-145 519.2 501 52.7
CAN.G1177.9 Capsicum annuum HOM05D003289 ORTHO05D004594 4.2e-143 512.3 555 51.2
Mapoly0006s0290 Marchantia polymorpha HOM05D003289 ORTHO05D004594 4.2e-143 512.3 548 50.0
Manes.04G006100 Manihot esculenta HOM05D003289 ORTHO05D004594 1.9e-140 503.4 525 51.2
arahy.Tifrunner.gnm1.ann1.U78W58 Arachis hypogaea HOM05D003289 ORTHO05D004594 1.6e-139 500.4 504 52.6
AagrBONN_evm.TU.Sc2ySwM_340.389 Anthoceros agrestis HOM05D003289 ORTHO05D004594 3.1e-138 496.1 554 47.8
CBR_g8396 Chara braunii HOM05D003289 ORTHO05D004594 2.6e-137 493.0 582 45.7
Aa31LG2G19310 Aethionema arabicum HOM05D003289 ORTHO05D004594 8.5e-136 488.0 537 49.3
C05p06350 Brassica napus HOM05D003289 ORTHO05D004594 2.5e-135 486.5 526 48.7
A06p05280 Brassica napus HOM05D003289 ORTHO05D004594 2.1e-134 483.4 527 48.6
Thhalv10006524m.g Eutrema salsugineum HOM05D003289 ORTHO05D004594 2.1e-134 483.4 527 49.5
BolC5t29391H Brassica oleracea HOM05D003289 ORTHO05D004594 1.5e-132 477.2 540 47.6
MBI15_g14875_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D004594 2.0e-132 476.9 553 49.4
BraA06t23736Z Brassica rapa HOM05D003289 ORTHO05D004594 6.3e-131 471.9 541 47.1
Carub.0001s0761 Capsella rubella HOM05D003289 ORTHO05D004594 4.1e-130 469.2 529 47.3
AL1G18660 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 6.9e-130 468.4 526 47.7
Sp1g06890 Schrenkiella parvula HOM05D003289 ORTHO05D004594 6.9e-130 468.4 527 47.4
AT1G08260 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 2.2e-128 463.4 526 46.4
Oeu031488.2 Olea europaea HOM05D003289 ORTHO05D004594 2.2e-128 463.4 412 59.0
CARHR008100 Cardamine hirsuta HOM05D003289 ORTHO05D004594 2.0e-124 450.3 529 46.1
AL4G20650 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 1.1e-122 444.5 526 46.4
AT2G27120 Arabidopsis thaliana HOM05D003289 ORTHO05D004594 3.8e-120 436.0 522 46.4
AL4G20810 Arabidopsis lyrata HOM05D003289 ORTHO05D004594 7.2e-119 431.8 510 46.3
SMO144G0205 Selaginella moellendorffii HOM05D003289 ORTHO05D004594 7.2e-119 431.8 507 46.4
ATR0820G074 Amborella trichopoda HOM05D003289 ORTHO05D004594 1.7e-112 410.6 408 53.2
Nitab4.5_0004240g0020 Nicotiana tabacum HOM05D003289 ORTHO05D004594 6.5e-112 408.7 401 54.4
Cpa.g.sc32.131 Carica papaya HOM05D003289 ORTHO05D004594 2.0e-105 387.1 380 53.4
CDE02G3060 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 1.1e-103 381.3 404 50.5
BcaB07g34067 Brassica carinata HOM05D003289 ORTHO05D004594 8.6e-96 355.1 429 45.5
Sc21g0007220 Simmondsia chinensis HOM05D003289 ORTHO05D004594 7.3e-79 298.9 266 56.4
MELO3C033806.2 Cucumis melo HOM05D003289 ORTHO05D004594 1.3e-75 288.1 297 48.8
CiPaw.13G138900 Carya illinoinensis HOM05D003289 ORTHO05D004594 1.7e-72 277.7 225 60.0
CiPaw.13G138800 Carya illinoinensis HOM05D003289 ORTHO05D004594 4.0e-69 266.5 233 57.9
MCO02G508 Micromonas commoda HOM05D003289 ORTHO05D004594 1.7e-67 261.2 649 29.1
QL02p000117 Quercus lobata HOM05D003289 ORTHO05D004594 3.1e-61 240.4 202 59.9
Cre03.g179961 Chlamydomonas reinhardtii HOM05D003289 ORTHO05D004594 5.1e-56 223.0 479 30.5
PRCOL_00004747 Prasinoderma coloniale HOM05D003289 ORTHO05D004594 4.8e-54 216.5 500 29.2
Cfa025881 Carpinus fangiana HOM05D003289 ORTHO05D004594 8.1e-46 189.1 513 27.9
Rhsim05G0032400 Rhododendron simsii HOM05D003289 ORTHO05D004594 3.4e-44 183.7 232 47.8
BcaB03g13343 Brassica carinata HOM05D003289 ORTHO05D004594 4.6e-33 146.7 126 56.3
BcaC07g41675 Brassica carinata HOM05D003289 ORTHO05D026451 2.4e-29 134.4 230 39.1
CDE02G3272 Ceratophyllum demersum HOM05D003289 ORTHO05D004594 6.9e-29 132.9 131 50.4
CARHR055750 Cardamine hirsuta HOM05D003289 ORTHO05D004594 1.2e-28 132.1 115 54.8
DCAR_017672 Daucus carota HOM05D003289 ORTHO05D004594 3.5e-25 120.6 84 71.4
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 3.1e-21 107.5 104 50.0
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 4.1e-21 107.1 99 53.5
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 1.9e-18 98.2 98 50.0
Aa31LG1G180 Aethionema arabicum HOM05D003289 ORTHO05D004594 7.7e-12 76.3 100 44.0
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 2.7e-09 67.8 52 63.5
SEGI_20214 Sequoiadendron giganteum HOM05D003289 ORTHO05D000003 1.0e-08 65.9 91 40.7
SEGI_12002 Sequoiadendron giganteum HOM05D003289 ORTHO05D004594 1.1e-07 62.4 83 42.2
Aa31LG1G190 Aethionema arabicum HOM05D003289 ORTHO05D026451 1.3e-06 58.9 169 31.4


User provided reference genes

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