Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 2.3e-199 698.7 368 100.0
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.9e-172 609.4 367 90.2
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 1.7e-157 559.7 363 86.2
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 1.9e-140 503.1 371 76.8
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 3.3e-137 492.3 377 74.5
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 1.4e-135 486.9 366 74.3
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 4.9e-133 478.4 375 71.7
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 1.9e-132 476.5 375 72.8
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 2.7e-131 472.6 375 71.2
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 1.8e-130 469.9 374 71.1
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 3.9e-130 468.8 376 70.7
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 3.9e-130 468.8 375 72.0
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 1.5e-129 466.8 374 70.1
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 1.5e-129 466.8 306 78.1
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 1.9e-129 466.5 374 71.1
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 5.6e-129 464.9 367 70.6
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 7.4e-129 464.5 309 76.7
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 7.4e-129 464.5 369 70.5
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 2.1e-128 463.0 375 71.2
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 2.1e-128 463.0 308 76.9
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 2.8e-128 462.6 308 76.6
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 3.7e-128 462.2 309 77.0
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 3.7e-128 462.2 376 69.9
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 4.8e-128 461.8 369 69.9
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 4.8e-128 461.8 369 71.5
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 6.2e-128 461.5 372 71.8
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 8.2e-128 461.1 309 76.4
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 8.2e-128 461.1 372 71.0
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 1.1e-127 460.7 306 77.1
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 1.1e-127 460.7 376 71.5
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 1.4e-127 460.3 364 72.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 1.4e-127 460.3 309 76.1
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 1.8e-127 459.9 374 70.9
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 2.4e-127 459.5 306 76.8
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 2.4e-127 459.5 308 76.6
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.4e-127 459.5 308 76.6
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 2.4e-127 459.5 309 75.7
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 3.1e-127 459.1 307 77.5
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 5.3e-127 458.4 370 66.2
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 5.3e-127 458.4 306 76.8
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 6.9e-127 458.0 374 69.0
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 6.9e-127 458.0 306 76.5
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 9.0e-127 457.6 368 66.0
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 9.0e-127 457.6 309 76.1
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 9.0e-127 457.6 309 76.1
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 9.0e-127 457.6 376 70.5
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 2.6e-126 456.1 374 70.1
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 3.4e-126 455.7 377 67.4
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 4.5e-126 455.3 303 76.6
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 5.8e-126 454.9 306 75.5
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 5.8e-126 454.9 309 75.7
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 7.6e-126 454.5 309 75.1
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 1.0e-125 454.1 309 75.7
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-125 454.1 308 76.0
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 1.0e-125 454.1 380 67.9
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 1.3e-125 453.8 399 66.4
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 1.3e-125 453.8 308 76.0
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 1.3e-125 453.8 374 69.0
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 2.9e-125 452.6 309 75.4
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 2.9e-125 452.6 306 75.5
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 2.9e-125 452.6 374 69.8
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 4.9e-125 451.8 308 75.6
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.9e-125 451.8 309 75.1
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 1.1e-124 450.7 308 74.7
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 1.1e-124 450.7 364 66.2
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 1.1e-124 450.7 303 75.9
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 1.4e-124 450.3 306 75.5
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.2e-124 449.1 309 75.1
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 1.2e-123 447.2 309 74.8
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.6e-123 446.8 375 69.1
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 1.6e-123 446.8 309 73.1
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 2.7e-123 446.0 308 74.4
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 4.6e-123 445.3 308 74.7
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 1.0e-122 444.1 298 75.2
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 1.3e-122 443.7 302 74.8
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 6.7e-122 441.4 305 73.1
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 1.1e-121 440.7 307 74.3
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.9e-121 439.9 309 72.2
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 3.3e-121 439.1 308 74.0
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 3.3e-121 439.1 306 72.2
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 1.3e-120 437.2 376 68.6
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 1.6e-120 436.8 309 73.5
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 2.2e-120 436.4 373 64.3
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 6.3e-120 434.9 308 71.8
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 8.2e-120 434.5 429 61.1
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.1e-119 432.6 298 75.5
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.5e-118 430.3 309 71.5
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 3.4e-118 429.1 293 76.1
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 1.3e-117 427.2 286 76.6
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 3.8e-117 425.6 303 70.3
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 3.8e-117 425.6 300 70.7
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 3.8e-117 425.6 300 70.7
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 5.0e-117 425.2 300 70.7
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 6.5e-117 424.9 308 69.8
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 8.5e-117 424.5 300 70.7
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 8.5e-117 424.5 300 70.3
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 8.5e-117 424.5 300 70.3
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 1.1e-116 424.1 308 69.8
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 1.9e-116 423.3 306 70.3
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 3.2e-116 422.5 300 70.7
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 3.2e-116 422.5 300 70.7
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.7e-115 419.5 300 70.3
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 4.6e-115 418.7 300 70.3
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 7.9e-115 417.9 308 68.2
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 1.8e-114 416.8 309 68.6
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 3.0e-114 416.0 309 68.0
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 8.8e-114 414.5 308 68.5
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.3e-113 412.5 307 71.3
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 9.4e-108 394.4 362 62.7
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 1.8e-106 390.2 367 63.2
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 1.3e-101 374.0 306 61.8
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 6.5e-101 371.7 306 66.0
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.1e-100 370.9 297 65.3
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 4.1e-95 352.4 301 63.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 7.7e-94 348.2 290 65.2
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 2.1e-91 340.1 243 72.4
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 2.8e-75 286.6 292 55.1
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 4.0e-58 229.6 297 43.1
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 5.2e-58 229.2 216 56.5
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 9.8e-57 224.9 185 62.2
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 9.8e-57 224.9 185 62.2
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.3e-56 221.9 194 60.3
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 9.2e-55 218.4 136 82.4
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 7.8e-54 215.3 131 82.4
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 9.9e-49 198.4 197 57.4
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 6.6e-45 185.7 144 72.2
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 5.2e-42 176.0 144 66.0
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 4.9e-40 169.5 301 35.5
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.9e-37 159.8 96 81.2
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.8e-33 146.0 96 76.0
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 7.6e-33 145.6 219 42.9
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 2.4e-31 140.6 171 48.5
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 3.0e-29 133.7 137 50.4
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.8e-27 127.1 165 46.1
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 2.8e-27 127.1 165 46.1
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 8.1e-27 125.6 289 30.8
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 5.1e-21 106.3 65 81.5


User provided reference genes

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