Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 3.1e-159 565.1 283 100.0
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 7.9e-155 550.4 283 97.5
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.4e-114 416.8 257 81.3
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 4.4e-105 385.2 287 69.7
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.7e-104 383.3 286 66.4
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.8e-103 379.8 284 67.3
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.1e-103 378.6 292 66.8
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 4.1e-103 378.6 284 66.9
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.0e-103 377.9 292 66.8
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.1e-103 377.5 292 66.4
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.2e-102 377.1 283 67.1
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.2e-102 377.1 283 67.1
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.6e-102 376.7 289 67.8
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 2.0e-102 376.3 291 66.7
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 4.5e-102 375.2 279 66.3
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.0e-101 374.0 271 70.8
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.3e-101 373.6 286 68.5
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 3.2e-100 369.0 287 65.2
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 5.5e-100 368.2 280 65.0
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 7.2e-100 367.9 289 67.5
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.6e-99 366.7 286 65.7
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.7e-99 365.9 291 64.9
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 4.7e-99 365.2 288 63.9
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 4.7e-99 365.2 287 66.6
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 8.0e-99 364.4 285 66.0
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.3e-98 362.8 292 64.7
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 5.2e-98 361.7 291 64.9
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 5.2e-98 361.7 291 64.9
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 1.3e-96 357.1 285 63.9
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.7e-96 356.7 274 68.2
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.2e-96 356.3 282 62.8
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 3.7e-96 355.5 284 63.0
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 4.8e-96 355.1 266 68.8
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.8e-96 355.1 291 60.8
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.1e-95 354.0 283 64.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 3.1e-95 352.4 280 63.9
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 5.4e-95 351.7 320 57.2
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 7.0e-95 351.3 283 64.3
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 7.0e-95 351.3 285 62.1
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.0e-94 349.7 279 63.8
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 2.7e-94 349.4 236 72.0
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 7.7e-94 347.8 286 62.9
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.3e-93 347.1 282 62.4
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 2.9e-93 345.9 284 62.0
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 3.8e-93 345.5 299 62.5
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 3.8e-93 345.5 278 61.9
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 5.0e-93 345.1 336 55.1
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 8.6e-93 344.4 283 61.5
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.1e-92 344.0 279 62.4
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.1e-92 344.0 292 62.3
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.8e-91 339.3 263 65.8
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 4.7e-91 338.6 280 61.4
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 6.1e-91 338.2 275 63.6
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 8.0e-91 337.8 282 60.3
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 8.0e-91 337.8 276 63.8
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 1.0e-90 337.4 294 59.9
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.0e-90 337.4 290 59.0
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.0e-90 337.4 290 58.6
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.0e-90 337.4 287 60.3
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.4e-90 337.0 299 59.2
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 2.3e-90 336.3 286 60.5
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.0e-90 335.9 255 64.7
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 5.2e-90 335.1 279 62.0
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 8.9e-90 334.3 288 59.7
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.5e-89 333.6 279 62.4
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.0e-89 333.2 287 59.9
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 3.4e-89 332.4 288 59.4
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 4.4e-89 332.0 287 58.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 4.4e-89 332.0 287 58.9
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 5.7e-89 331.6 290 60.0
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 7.5e-89 331.3 292 58.6
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 9.8e-89 330.9 287 58.2
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 9.8e-89 330.9 287 58.5
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 9.8e-89 330.9 287 58.2
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 2.2e-88 329.7 290 57.2
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 2.2e-88 329.7 291 57.7
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 3.7e-88 328.9 248 66.9
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 4.9e-88 328.6 298 57.0
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 2.4e-87 326.2 272 62.1
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.1e-87 325.5 261 64.4
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 7.0e-87 324.7 288 57.3
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 5.9e-86 321.6 286 58.4
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 7.8e-86 321.2 295 55.6
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 2.9e-85 319.3 288 58.3
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 5.0e-85 318.5 286 60.5
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 8.6e-85 317.8 266 62.0
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-84 317.4 309 54.7
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.5e-84 317.0 320 53.4
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 2.5e-84 316.2 283 58.0
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 9.5e-84 314.3 285 56.8
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.9e-80 302.8 291 55.7
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 2.9e-80 302.8 295 53.6
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.4e-79 300.4 220 68.6
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.5e-78 295.8 282 54.3
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 4.6e-78 295.4 237 59.9
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.5e-76 290.4 304 53.0
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 5.6e-76 288.5 281 52.3
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.3e-76 288.1 219 65.8
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 8.0e-75 284.6 201 68.7
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 8.9e-74 281.2 277 55.6
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.5e-73 280.4 202 67.3
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 4.4e-73 278.9 284 52.8
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.4e-73 278.9 234 60.7
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 8.3e-72 274.6 207 65.2
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.0e-71 271.6 285 52.6
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 3.3e-68 262.7 225 60.9
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.8e-67 259.6 245 58.4
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.4e-63 247.3 280 50.0
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 3.3e-60 236.1 198 61.1
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.2e-57 227.6 198 60.1
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 4.4e-57 225.7 210 59.5
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 7.6e-57 224.9 232 54.3
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.8e-56 222.6 225 57.3
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.1e-55 221.1 215 58.1
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 5.4e-55 218.8 185 56.2
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.3e-53 214.2 192 57.3
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 8.7e-53 211.5 288 46.9
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-52 211.1 149 71.1
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.1e-50 204.5 269 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 4.0e-50 202.6 284 41.9
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.7e-48 197.2 120 78.3
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 3.2e-47 193.0 299 37.8
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.6e-46 190.7 215 48.4
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 6.0e-46 188.7 126 72.2
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 7.3e-44 181.8 285 42.5
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 7.6e-41 171.8 234 43.2
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 4.9e-40 169.1 122 63.1
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 8.4e-40 168.3 107 76.6
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.2e-38 164.5 198 49.5
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 7.9e-38 161.8 170 53.5
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.0e-34 149.4 137 57.7
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.5e-33 147.5 306 33.7
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.1e-28 131.3 200 44.0
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.5e-28 131.0 218 40.8
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.8e-26 124.0 83 68.7
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 9.0e-26 121.7 204 43.6
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 2.1e-14 84.0 245 26.9
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 4.6e-14 82.8 211 28.9
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.1e-10 71.6 83 51.8


User provided reference genes

Program Settings