Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2788.1 1463 100.0
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2445.6 1468 85.9
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2331.2 1452 83.2
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2261.1 1501 77.3
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2209.5 1500 75.9
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2202.6 1493 75.8
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2194.9 1493 75.2
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2184.1 1498 74.4
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2178.7 1483 75.4
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2165.6 1497 73.9
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2164.0 1551 72.5
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2160.6 1534 72.4
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2160.2 1500 73.1
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2157.9 1490 73.9
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2157.1 1496 72.7
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2156.7 1498 73.8
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2154.4 1497 73.7
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2152.1 1497 73.6
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2145.9 1491 73.0
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2145.9 1494 72.8
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2145.5 1500 72.2
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2142.1 1499 72.4
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2140.9 1492 73.5
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2137.5 1490 74.2
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1502 72.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2133.6 1489 74.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2129.8 1474 73.5
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2124.7 1492 72.5
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2122.8 1493 72.6
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2118.2 1492 72.8
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2118.2 1492 72.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2118.2 1641 70.6
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2115.9 1487 72.4
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2111.3 1565 70.6
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2110.1 1491 72.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2109.7 1491 72.1
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2109.7 1498 72.6
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2107.4 1493 71.5
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2106.6 1493 71.9
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2105.9 1493 71.5
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2105.5 1495 72.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2103.2 1492 72.0
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2101.6 1492 71.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2099.7 1494 72.0
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2099.3 1493 71.3
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2098.2 1483 72.2
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2094.3 1497 71.8
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2093.5 1491 71.5
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2090.8 1493 70.9
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2085.8 1484 71.4
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2082.8 1528 70.0
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2081.6 1490 71.0
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2081.2 1495 71.1
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2078.1 1493 71.1
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2070.0 1490 70.6
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2062.0 1481 70.3
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2059.6 1445 72.5
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2045.4 1476 70.9
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2033.5 1476 70.9
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2033.5 1500 70.1
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2030.4 1497 69.5
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2012.3 1491 69.6
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1999.9 1487 68.3
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1992.6 1489 68.9
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1972.2 1488 68.3
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1966.4 1495 67.8
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1964.9 1548 66.3
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1963.3 1483 67.5
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1961.0 1489 68.0
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1959.9 1494 67.1
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1959.5 1484 68.0
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1958.7 1480 67.9
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1956.4 1486 67.3
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1955.6 1480 67.7
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1953.3 1493 66.8
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1952.9 1490 67.4
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1952.9 1484 67.5
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1950.6 1488 67.1
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1947.6 1490 67.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1936.0 1490 67.0
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1934.1 1495 66.9
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1931.8 1477 67.2
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1930.6 1495 66.7
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1929.8 1479 67.0
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1929.8 1487 66.8
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1926.0 1497 66.4
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1925.6 1490 66.8
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1924.4 1485 66.8
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1919.8 1486 66.7
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1909.8 1480 67.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1905.6 1308 75.9
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1882.8 1279 75.8
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1863.6 1574 63.0
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1857.8 1457 65.5
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1843.9 1503 64.4
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1827.4 1296 73.1
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1826.2 1582 62.2
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1819.3 1303 72.4
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1801.2 1309 71.8
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1799.6 1383 70.2
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1780.4 1434 66.0
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1776.9 1476 62.7
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1776.1 1204 75.7
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1759.6 1471 61.4
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1720.3 1360 65.8
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1674.4 1431 60.4
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1575.1 1512 56.2
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1573.1 1524 56.0
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1529.6 991 77.2
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1464.9 1411 58.9
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1363.6 1361 56.6
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1328.9 1192 58.1
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1325.8 1087 64.4
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1315.8 1308 55.2
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1307.4 1360 54.8
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1107.0 1270 53.0
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 6.9e-303 1044.6 738 73.4
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.0e-295 1018.8 847 62.3
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 5.4e-292 1008.4 745 69.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.3e-261 907.5 776 63.5
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 9.1e-247 858.2 701 63.1
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 1.9e-244 850.5 924 54.4
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.1e-231 806.6 582 69.1
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 3.4e-201 706.8 735 54.8
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 4.4e-201 706.4 612 62.1
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 2.5e-188 664.1 892 44.8
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.7e-182 644.0 595 60.2
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.0e-173 614.0 363 79.9
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.6e-153 547.7 464 63.4
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.7e-153 546.2 469 61.2
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.1e-148 532.3 440 66.6
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 5.0e-136 490.3 568 51.2
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.0e-109 401.4 752 37.0
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 8.9e-101 373.2 1548 27.9
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 6.4e-99 367.1 1797 24.7
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 6.8e-93 347.1 445 46.7
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 2.0e-92 345.5 1604 26.4
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 7.8e-89 333.6 218 78.0
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.8e-75 288.1 224 64.3
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 8.4e-75 287.0 335 51.6
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.6e-70 271.6 230 61.3
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 9.0e-69 266.9 155 75.5
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.6e-68 265.4 152 80.9
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 4.3e-63 248.1 195 63.1
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 5.6e-63 247.7 264 54.5
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.1e-62 245.7 232 59.1
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 1.9e-55 222.6 1342 23.8
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 8.2e-46 190.7 102 87.3
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 5.9e-44 184.5 190 52.6
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 5.5e-42 177.9 189 52.9
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 5.9e-36 157.9 218 50.0
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.0e-35 157.1 126 65.1
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.2e-33 150.2 129 55.8
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.7e-33 148.3 337 34.4
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 6.3e-30 137.9 122 59.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 5.9e-28 131.3 107 63.6
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.2e-26 125.6 101 66.3
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 7.2e-26 124.4 102 62.7
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.1e-23 117.1 65 80.0
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 4.4e-23 115.2 56 92.9
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 3.5e-20 105.5 65 76.9
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 9.4e-18 97.4 131 46.6
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.2e-14 86.3 112 47.3
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.1e-13 84.0 53 75.5
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.1e-13 84.0 53 75.5
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.3e-13 81.6 70 55.7
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 7.7e-12 77.8 430 24.2
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 4.7e-09 68.6 40 85.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 8.0e-09 67.8 34 82.4
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 9.8e-07 60.8 43 67.4
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 6.3e-06 58.2 83 36.1


User provided reference genes

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