Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0206611 Helianthus annuus HOM05D000032 ORTHO05D016333 4.4e-58 228.0 139 100.0
HanXRQChr14g0461911 Helianthus annuus HOM05D000032 ORTHO05D004313 1.8e-51 206.1 142 91.5
ECA233G3543 Erigeron canadensis HOM05D000032 ORTHO05D004313 6.4e-41 171.0 148 63.5
Cpa.g.sc3.253 Carica papaya HOM05D000032 ORTHO05D004313 9.2e-40 167.2 137 71.5
HanXRQChr08g0214971 Helianthus annuus HOM05D000032 ORTHO05D004313 9.2e-40 167.2 149 69.1
Dinv28522 Davidia involucrata HOM05D000032 ORTHO05D004313 2.7e-39 165.6 141 73.8
Dinv08002 Davidia involucrata HOM05D000032 ORTHO05D004313 4.6e-39 164.9 149 68.5
ECA238G3800 Erigeron canadensis HOM05D000032 ORTHO05D004313 1.7e-38 162.9 104 81.7
Lsat_1_v5_gn_2_129840 Lactuca sativa HOM05D000032 ORTHO05D004313 2.3e-38 162.5 94 87.2
TWI39G0408 Tripterygium wilfordii HOM05D000032 ORTHO05D004313 3.0e-38 162.2 142 72.5
vmacro09882 Vaccinium macrocarpon HOM05D000032 ORTHO05D004313 1.9e-37 159.5 140 65.7
TAR629G0515 Trochodendron aralioides HOM05D000032 ORTHO05D004313 9.5e-37 157.1 139 66.9
PGR142G1914 Punica granatum HOM05D000032 ORTHO05D004313 1.6e-36 156.4 95 82.1
MSTRG.118 Avicennia marina HOM05D000032 ORTHO05D004313 1.1e-35 153.7 136 65.4
Prupe.2G284200 Prunus persica HOM05D000032 ORTHO05D004313 1.1e-35 153.7 142 65.5
Lj8A35T79 Lonicera japonica HOM05D000032 ORTHO05D004313 1.4e-35 153.3 100 78.0
CSS0014805 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004313 1.8e-35 152.9 125 75.2
CSS0037420 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004313 1.8e-35 152.9 125 75.2
THA.LOC104824842 Tarenaya hassleriana HOM05D000032 ORTHO05D004313 1.8e-35 152.9 103 73.8
Duzib084G0726 Durio zibethinus HOM05D000032 ORTHO05D004313 3.1e-35 152.1 142 65.5
Eucgr.K00136 Eucalyptus grandis HOM05D000032 ORTHO05D004313 4.0e-35 151.8 95 80.0
Duzib205G1326 Durio zibethinus HOM05D000032 ORTHO05D004313 5.2e-35 151.4 145 61.4
CiPaw.04G064100 Carya illinoinensis HOM05D000032 ORTHO05D004313 8.9e-35 150.6 135 63.7
Oeu030163.1 Olea europaea HOM05D000032 ORTHO05D004313 8.9e-35 150.6 104 75.0
Actinidia13528 Actinidia chinensis HOM05D000032 ORTHO05D004313 1.2e-34 150.2 105 72.4
RcHm_v2.0_Chr1g0375371 Rosa chinensis HOM05D000032 ORTHO05D004313 1.2e-34 150.2 139 65.5
unitig_0.g1165 Utricularia gibba HOM05D000032 ORTHO05D004313 1.5e-34 149.8 107 72.9
DCAR_009438 Daucus carota HOM05D000032 ORTHO05D004313 2.0e-34 149.4 123 69.1
SalBow4G2661 Salvia bowleyana HOM05D000032 ORTHO05D004313 2.0e-34 149.4 101 73.3
Atru.chr1.608 Acer truncatum HOM05D000032 ORTHO05D004313 2.6e-34 149.1 139 66.9
Oeu039220.1 Olea europaea HOM05D000032 ORTHO05D004313 4.4e-34 148.3 104 75.0
TWI38G0913 Tripterygium wilfordii HOM05D000032 ORTHO05D004313 4.4e-34 148.3 142 69.7
Atru.chr11.44 Acer truncatum HOM05D000032 ORTHO05D004313 5.8e-34 147.9 139 66.9
GSVIVG01018476001 Vitis vinifera HOM05D000032 ORTHO05D004313 5.8e-34 147.9 95 76.8
Cc02_g03740 Coffea canephora HOM05D000032 ORTHO05D004313 7.5e-34 147.5 105 73.3
MD01G1187800 Malus domestica HOM05D000032 ORTHO05D004313 9.8e-34 147.1 99 71.7
Hund11790 Selenicereus undatus HOM05D000032 ORTHO05D004313 9.8e-34 147.1 107 68.2
VMungo0720G2533 Vigna mungo HOM05D000032 ORTHO05D004313 9.8e-34 147.1 100 72.0
Ah.07g208430 Amaranthus hybridus HOM05D000032 ORTHO05D004313 1.3e-33 146.7 137 59.1
CiPaw.03G098400 Carya illinoinensis HOM05D000032 ORTHO05D004313 1.3e-33 146.7 128 63.3
Haze_13810 Corylus avellana HOM05D000032 ORTHO05D004313 1.3e-33 146.7 135 60.7
Lj5g0013117 Lotus japonicus HOM05D000032 ORTHO05D004313 1.3e-33 146.7 103 70.9
QL12p039208 Quercus lobata HOM05D000032 ORTHO05D004313 2.2e-33 146.0 141 66.0
CANSAT21G1573 Cannabis sativa HOM05D000032 ORTHO05D004313 2.9e-33 145.6 140 67.1
ClCG01G005260 Citrullus lanatus HOM05D000032 ORTHO05D004313 2.9e-33 145.6 130 61.5
MD07G1259900 Malus domestica HOM05D000032 ORTHO05D004313 8.3e-33 144.1 125 64.8
arahy.Tifrunner.gnm1.ann1.YYW2BF Arachis hypogaea HOM05D000032 ORTHO05D004313 1.9e-32 142.9 141 64.5
Phvul.007G063700 Phaseolus vulgaris HOM05D000032 ORTHO05D004313 2.4e-32 142.5 100 70.0
Thecc.03G163800 Theobroma cacao HOM05D000032 ORTHO05D004313 2.4e-32 142.5 95 74.7
Manes.14G031800 Manihot esculenta HOM05D000032 ORTHO05D004313 3.2e-32 142.1 148 66.2
SGA_v2.0_scaffold303G47877 Striga asiatica HOM05D000032 ORTHO05D004313 3.2e-32 142.1 94 73.4
Rhsim03G0173200 Rhododendron simsii HOM05D000032 ORTHO05D004313 4.1e-32 141.7 99 71.7
TAR374G0375 Trochodendron aralioides HOM05D000032 ORTHO05D004313 4.1e-32 141.7 94 74.5
MELO3C005400.2 Cucumis melo HOM05D000032 ORTHO05D004313 5.4e-32 141.4 105 66.7
DCAR_020212 Daucus carota HOM05D000032 ORTHO05D004313 5.4e-32 141.4 126 67.5
Gorai.008G282800 Gossypium raimondii HOM05D000032 ORTHO05D004313 5.4e-32 141.4 147 57.1
arahy.Tifrunner.gnm1.ann1.C0EFXX Arachis hypogaea HOM05D000032 ORTHO05D004313 7.1e-32 141.0 141 62.4
Actinidia31796 Actinidia chinensis HOM05D000032 ORTHO05D004313 9.2e-32 140.6 95 74.7
Gohir.A12G263300 Gossypium hirsutum HOM05D000032 ORTHO05D004313 9.2e-32 140.6 152 60.5
Nitab4.5_0001341g0060 Nicotiana tabacum HOM05D000032 ORTHO05D004313 9.2e-32 140.6 102 70.6
EL10Ac3g05767 Beta vulgaris HOM05D000032 ORTHO05D004313 1.6e-31 139.8 93 72.0
Nn4g26453 Nelumbo nucifera HOM05D000032 ORTHO05D004313 1.6e-31 139.8 104 68.3
vmacro06757 Vaccinium macrocarpon HOM05D000032 ORTHO05D004313 1.6e-31 139.8 93 72.0
Potri.015G133400 Populus trichocarpa HOM05D000032 ORTHO05D004313 2.1e-31 139.4 94 69.1
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 2.7e-31 139.0 125 68.0
Ciclev10004459m.g Citrus clementina HOM05D000032 ORTHO05D004313 2.7e-31 139.0 94 70.2
Gohir.D12G263800 Gossypium hirsutum HOM05D000032 ORTHO05D004313 2.7e-31 139.0 147 63.3
Gohir.D11G007900 Gossypium hirsutum HOM05D000032 ORTHO05D004313 4.6e-31 138.3 95 71.6
Gorai.007G009400 Gossypium raimondii HOM05D000032 ORTHO05D004313 4.6e-31 138.3 95 71.6
SGA_v2.0_scaffold10G05447 Striga asiatica HOM05D000032 ORTHO05D004313 4.6e-31 138.3 104 69.2
CsaV3_5G005540 Cucumis sativus L. HOM05D001244 ORTHO05D004313 6.0e-31 137.9 94 71.3
Gohir.A11G008600 Gossypium hirsutum HOM05D000032 ORTHO05D004313 6.0e-31 137.9 95 71.6
Nitab4.5_0007841g0010 Nicotiana tabacum HOM05D000032 ORTHO05D004313 6.0e-31 137.9 102 69.6
MSTRG.8791 Avicennia marina HOM05D000032 ORTHO05D004313 7.8e-31 137.5 151 57.6
Glyma.20G152200 Glycine max HOM05D000032 ORTHO05D004313 1.0e-30 137.1 95 70.5
Manes.06G139200 Manihot esculenta HOM05D000032 ORTHO05D004313 1.0e-30 137.1 104 64.4
PGSC0003DMG400031016 Solanum tuberosum HOM05D000032 ORTHO05D004313 1.3e-30 136.7 105 72.4
Migut.F01166 Erythranthe guttata HOM05D000032 ORTHO05D004313 3.0e-30 135.6 94 73.4
FvH4_7g28410 Fragaria vesca HOM05D000032 ORTHO05D004313 3.0e-30 135.6 139 59.7
FAN06G1059 Fragaria x ananassa HOM05D000032 ORTHO05D004313 3.0e-30 135.6 139 59.7
FAN06G1914 Fragaria x ananassa HOM05D000032 ORTHO05D004313 3.0e-30 135.6 139 59.7
FAN10G1730 Fragaria x ananassa HOM05D000032 ORTHO05D004313 3.0e-30 135.6 139 59.7
FAN01G2995 Fragaria x ananassa HOM05D000032 ORTHO05D004313 3.9e-30 135.2 93 68.8
Nitab4.5_0006353g0030 Nicotiana tabacum HOM05D000032 ORTHO05D004313 5.1e-30 134.8 103 68.0
Peaxi162Scf00192g00836 Petunia axillaris HOM05D000032 ORTHO05D004313 5.1e-30 134.8 104 67.3
Nitab4.5_0000072g0160 Nicotiana tabacum HOM05D000032 ORTHO05D004313 6.6e-30 134.4 105 68.6
CAN.G28.16 Capsicum annuum HOM05D000032 ORTHO05D004313 8.6e-30 134.0 102 67.6
Lalb_Chr19g0131241 Lupinus albus HOM05D000032 ORTHO05D004313 8.6e-30 134.0 95 69.5
Sopen03g003010 Solanum pennellii HOM05D000032 ORTHO05D004313 8.6e-30 134.0 95 73.7
Lalb_Chr01g0008871 Lupinus albus HOM05D000032 ORTHO05D004313 1.1e-29 133.7 95 67.4
Lalb_Chr03g0032991 Lupinus albus HOM05D000032 ORTHO05D004313 1.1e-29 133.7 95 66.3
PGSC0003DMG400027958 Solanum tuberosum HOM05D000032 ORTHO05D004313 1.1e-29 133.7 99 67.7
CAN.G1135.3 Capsicum annuum HOM05D000032 ORTHO05D004313 1.5e-29 133.3 105 68.6
Lj2g0011704 Lotus japonicus HOM05D000032 ORTHO05D004313 1.5e-29 133.3 99 66.7
PSO782G2275 Papaver somniferum HOM05D000032 ORTHO05D004313 1.5e-29 133.3 100 64.0
Medtr1g102410 Medicago truncatula HOM05D000032 ORTHO05D004313 1.9e-29 132.9 127 57.5
Peaxi162Scf01178g00115 Petunia axillaris HOM05D000032 ORTHO05D004313 1.9e-29 132.9 129 59.7
MBI04_g19223_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D004313 2.5e-29 132.5 93 67.7
Psat0s3731g0160 Pisum sativum HOM05D000032 ORTHO05D004313 2.5e-29 132.5 94 67.0
Sopen06g011210 Solanum pennellii HOM05D000032 ORTHO05D004313 2.5e-29 132.5 95 71.6
TPR.G24657 Trifolium pratense HOM05D000032 ORTHO05D004313 2.5e-29 132.5 105 61.9
Solyc03g007010.4 Solanum lycopersicum HOM05D000032 ORTHO05D004313 4.3e-29 131.7 95 72.6
TPR.G26094 Trifolium pratense HOM05D000032 ORTHO05D004313 4.3e-29 131.7 94 67.0
PSO478G0487 Papaver somniferum HOM05D000032 ORTHO05D004313 5.6e-29 131.3 92 67.4
FAN03G3033 Fragaria x ananassa HOM05D000032 ORTHO05D004313 9.5e-29 130.6 139 54.7
FAN03G3419 Fragaria x ananassa HOM05D000032 ORTHO05D004313 9.5e-29 130.6 139 58.3
Psat6g203760 Pisum sativum HOM05D000032 ORTHO05D004313 9.5e-29 130.6 142 50.7
Glyma.10G241900 Glycine max HOM05D000032 ORTHO05D004313 2.1e-28 129.4 101 65.3
Potri.012G131000 Populus trichocarpa HOM05D000032 ORTHO05D004313 2.1e-28 129.4 89 66.3
Sp2g25390 Schrenkiella parvula HOM05D000032 ORTHO05D004313 2.1e-28 129.4 104 63.5
Medtr6g056080 Medicago truncatula HOM05D000032 ORTHO05D004313 2.8e-28 129.0 95 65.3
Aqoxy7G00549 Aquilegia oxysepala HOM05D000032 ORTHO05D004313 6.2e-28 127.9 95 67.4
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 8.1e-28 127.5 87 72.4
MD07G1261300 Malus domestica HOM05D000032 ORTHO05D004313 8.1e-28 127.5 127 55.9
arahy.Tifrunner.gnm1.ann1.U9Y6Z5 Arachis hypogaea HOM05D000032 ORTHO05D004313 2.3e-27 125.9 135 51.9
arahy.Tifrunner.gnm1.ann1.ZFZQ7Q Arachis hypogaea HOM05D000032 ORTHO05D004313 2.3e-27 125.9 135 51.9
A09p07560 Brassica napus HOM05D000032 ORTHO05D004313 2.3e-27 125.9 106 58.5
BraA09t36410Z Brassica rapa HOM05D000032 ORTHO05D004313 2.3e-27 125.9 106 58.5
Thhalv10003756m.g Eutrema salsugineum HOM05D000032 ORTHO05D004313 4.0e-27 125.2 105 62.9
Rhsim09G0194000 Rhododendron simsii HOM05D000032 ORTHO05D004313 4.0e-27 125.2 189 45.0
Sed0020096 Sechium edule HOM05D000032 ORTHO05D004313 5.2e-27 124.8 94 66.0
Ca_10831_v3 Cicer arietinum L. HOM05D000032 ORTHO05D004313 8.9e-27 124.0 99 61.6
BcaC04g23425 Brassica carinata HOM05D000032 ORTHO05D004313 1.2e-26 123.6 94 63.8
C09p08450 Brassica napus HOM05D000032 ORTHO05D004313 1.2e-26 123.6 94 63.8
BolC9t53755H Brassica oleracea HOM05D000032 ORTHO05D004313 1.2e-26 123.6 94 63.8
Aa31LG11G1400 Aethionema arabicum HOM05D000032 ORTHO05D004313 1.5e-26 123.2 96 66.7
FAN06G4681 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.5e-26 123.2 94 63.8
CARHR275980 Cardamine hirsuta HOM05D000032 ORTHO05D004313 2.6e-26 122.5 106 60.4
FvH4_7g28430 Fragaria vesca HOM05D001120 ORTHO05D002943 3.4e-26 122.1 94 62.8
BcaB07g29792 Brassica carinata HOM05D000032 ORTHO05D004313 4.4e-26 121.7 103 58.3
Sabra15G0145800 Salix brachista HOM05D000032 ORTHO05D004313 5.8e-26 121.3 128 51.6
FAN10G3067 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.9e-26 120.6 94 61.7
AT5G62190 Arabidopsis thaliana HOM05D000032 ORTHO05D004313 1.7e-25 119.8 96 62.5
Atru.chr1.687 Acer truncatum HOM05D000056 ORTHO05D000019 6.4e-25 117.9 84 70.2
Sed0013996 Sechium edule HOM05D000032 ORTHO05D004313 8.4e-25 117.5 104 63.5
AL8G39010 Arabidopsis lyrata HOM05D000032 ORTHO05D004313 1.9e-24 116.3 87 64.4
Carub.0008s2288 Capsella rubella HOM05D000032 ORTHO05D004313 1.9e-24 116.3 95 62.1
BcaNung01407 Brassica carinata HOM05D000032 ORTHO05D004313 2.4e-24 115.9 89 60.7
AUR62021290 Chenopodium quinoa HOM05D000032 ORTHO05D004313 3.2e-24 115.5 107 56.1
CDE04G3308 Ceratophyllum demersum HOM05D000032 ORTHO05D004313 5.4e-24 114.8 93 57.0
CDE12G0387 Ceratophyllum demersum HOM05D000032 ORTHO05D004313 5.4e-24 114.8 103 56.3
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 5.4e-24 114.8 118 50.8
Eucgr.L00808 Eucalyptus grandis HOM05D000032 ORTHO05D004313 7.1e-24 114.4 89 66.3
ATR0757G026 Amborella trichopoda HOM05D000032 ORTHO05D004313 1.2e-23 113.6 105 56.2
AUR62016081 Chenopodium quinoa HOM05D000032 ORTHO05D004313 1.2e-23 113.6 108 55.6
FAN06G2717 Fragaria x ananassa HOM05D001120 ORTHO05D002943 4.6e-23 111.7 94 60.6
BcaC03g18134 Brassica carinata HOM05D000032 ORTHO05D004313 3.9e-22 108.6 95 57.9
BolC2t12262H Brassica oleracea HOM05D000032 ORTHO05D004313 3.9e-22 108.6 95 57.9
HPP92_003296 Vanilla planifolia HOM05D000032 ORTHO05D004313 6.6e-22 107.8 103 48.5
MD07G1260400 Malus domestica HOM05D000032 ORTHO05D004313 1.1e-21 107.1 81 67.9
A02p42170 Brassica napus HOM05D000032 ORTHO05D004313 1.5e-21 106.7 104 54.8
BraA02t09146Z Brassica rapa HOM05D000032 ORTHO05D004313 1.5e-21 106.7 104 54.8
C02p62020 Brassica napus HOM05D000032 ORTHO05D004313 9.6e-21 104.0 104 53.8
SHI13814 Sapria himalayana HOM05D000032 ORTHO05D004313 1.6e-20 103.2 94 54.3
Hund04660 Selenicereus undatus HOM05D000032 ORTHO05D004313 2.1e-20 102.8 86 60.5
Os09g0520700 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D004313 1.8e-19 99.8 94 48.9
TPR.G21681 Trifolium pratense HOM05D000032 ORTHO05D004313 1.8e-19 99.8 66 68.2
ECA233G6122 Erigeron canadensis HOM05D001120 ORTHO05D002943 2.4e-19 99.4 74 71.6
Zm00001eb103030 Zea mays HOM05D000032 ORTHO05D004313 4.0e-19 98.6 105 47.6
Medtr1g102425 Medicago truncatula HOM05D000032 ORTHO05D004313 4.9e-17 91.7 127 47.2
PSO384G0845 Papaver somniferum HOM05D000032 ORTHO05D016333 1.1e-16 90.5 73 58.9
Psat2g002200 Pisum sativum HOM05D000032 ORTHO05D016333 1.6e-15 86.7 51 74.5
Psat2g002280 Pisum sativum HOM05D000032 ORTHO05D015646 1.6e-15 86.7 51 74.5
Psat3g008640 Pisum sativum HOM05D000032 ORTHO05D016333 1.6e-15 86.7 51 74.5
GSVIVG01038169001 Vitis vinifera HOM05D000032 ORTHO05D015646 4.6e-15 85.1 56 73.2
Mapoly0021s0161 Marchantia polymorpha HOM05D000032 ORTHO05D004313 1.1e-11 73.9 97 38.1
Pp3c10_20840 Physcomitrium patens HOM05D000032 ORTHO05D004313 2.6e-10 69.3 97 37.1
Pp3c20_20710 Physcomitrium patens HOM05D000032 ORTHO05D004313 2.6e-10 69.3 102 37.3
SMO141G0196 Selaginella moellendorffii HOM05D000032 ORTHO05D004313 3.4e-10 68.9 103 34.0
Eucgr.A00875 Eucalyptus grandis HOM05D000032 ORTHO05D015646 4.4e-10 68.6 40 72.5
CBR_g45654 Chara braunii HOM05D000032 ORTHO05D004313 5.8e-10 68.2 93 36.6
CBR_g45655 Chara braunii HOM05D000032 ORTHO05D004313 5.8e-10 68.2 93 36.6
MBI16_g24675_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D016333 1.3e-09 67.0 63 58.7
MBI04_g43166_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D016333 4.9e-09 65.1 115 38.3
Psat7g138600 Pisum sativum HOM05D003579 ORTHO05D016333 1.4e-08 63.5 55 58.2
Psat5g153280 Pisum sativum HOM05D051788 ORTHO05D016333 4.2e-08 62.0 50 60.0
Psat1g196320 Pisum sativum HOM05D000032 ORTHO05D016333 5.4e-08 61.6 56 55.4
Cre02.g118300 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D004313 5.1e-06 55.1 98 34.7


User provided reference genes

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