Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 3.1e-65 252.3 171 100.0
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.2e-56 223.8 152 88.8
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.0e-55 220.7 177 87.0
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 2.2e-55 219.5 151 88.7
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.6e-53 213.4 152 84.9
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.7e-50 203.4 171 84.2
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.7e-50 203.4 154 84.4
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 1.4e-49 200.3 155 78.1
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 1.4e-49 200.3 155 78.1
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.1e-49 199.1 142 83.1
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 3.1e-49 199.1 141 86.5
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 3.1e-49 199.1 155 77.4
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 4.1e-49 198.7 147 85.7
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 4.1e-49 198.7 150 82.7
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 4.1e-49 198.7 150 78.7
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 5.4e-49 198.4 177 75.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 9.1e-49 197.6 172 80.2
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 1.2e-48 197.2 176 79.0
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.2e-48 197.2 143 86.0
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 1.2e-48 197.2 146 82.9
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.2e-48 197.2 142 83.8
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.6e-48 196.8 134 83.6
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 1.6e-48 196.8 146 84.2
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.6e-48 196.8 145 73.8
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 2.0e-48 196.4 150 78.7
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.0e-48 196.4 143 87.4
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.0e-48 196.4 143 87.4
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.0e-48 196.4 143 87.4
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 2.7e-48 196.1 171 80.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 4.5e-48 195.3 149 75.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 5.9e-48 194.9 151 76.2
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 5.9e-48 194.9 151 76.2
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.9e-48 194.9 148 80.4
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 5.9e-48 194.9 146 71.9
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 5.9e-48 194.9 152 78.3
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 5.9e-48 194.9 159 76.1
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 5.9e-48 194.9 173 80.3
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 5.9e-48 194.9 176 83.0
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.7e-48 194.5 144 75.0
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.7e-48 194.5 145 77.9
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 7.7e-48 194.5 150 82.0
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.0e-47 194.1 143 83.9
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.3e-47 193.7 151 76.2
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.3e-47 193.7 151 76.2
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.3e-47 193.7 151 76.2
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.3e-47 193.7 144 83.3
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.3e-47 193.7 172 83.7
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 2.3e-47 193.0 147 74.1
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 2.3e-47 193.0 143 81.8
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.9e-47 192.6 141 77.3
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 3.8e-47 192.2 141 83.0
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.8e-47 192.2 141 85.1
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.8e-47 192.2 141 85.1
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 5.0e-47 191.8 145 79.3
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 5.0e-47 191.8 145 79.3
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 5.0e-47 191.8 151 75.5
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 5.0e-47 191.8 180 73.3
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 6.5e-47 191.4 148 80.4
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.5e-47 191.4 143 84.6
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.5e-47 191.4 143 84.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.5e-47 191.4 143 84.6
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 6.5e-47 191.4 151 78.1
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 6.5e-47 191.4 158 77.2
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 6.5e-47 191.4 141 73.8
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 8.6e-47 191.0 130 81.5
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 8.6e-47 191.0 141 80.1
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 8.6e-47 191.0 155 78.7
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 1.1e-46 190.7 99 88.9
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.1e-46 190.7 173 83.8
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.1e-46 190.7 142 85.2
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 1.5e-46 190.3 147 82.3
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 1.5e-46 190.3 147 82.3
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.5e-46 190.3 170 82.4
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.5e-46 190.3 148 79.1
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.5e-46 190.3 141 75.9
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.9e-46 189.9 145 81.4
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 1.9e-46 189.9 150 81.3
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.9e-46 189.9 172 80.8
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.9e-46 189.9 141 84.4
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.9e-46 189.9 148 77.0
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 2.5e-46 189.5 151 80.8
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 3.3e-46 189.1 151 76.8
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 3.3e-46 189.1 153 76.5
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 3.3e-46 189.1 148 75.0
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.3e-46 189.1 151 78.8
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.2e-46 188.7 140 80.7
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 4.2e-46 188.7 140 76.4
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 5.5e-46 188.3 145 78.6
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 5.5e-46 188.3 146 78.1
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 7.2e-46 188.0 152 75.7
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 7.2e-46 188.0 153 77.1
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 7.2e-46 188.0 141 82.3
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 7.2e-46 188.0 144 80.6
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 9.5e-46 187.6 141 85.1
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 9.5e-46 187.6 99 85.9
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.2e-45 187.2 146 71.2
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-45 187.2 153 75.2
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.2e-45 187.2 146 76.0
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 1.2e-45 187.2 152 76.3
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.6e-45 186.8 142 83.1
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 1.6e-45 186.8 146 76.7
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.6e-45 186.8 164 70.7
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 2.1e-45 186.4 146 82.9
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.1e-45 186.4 142 81.7
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 2.1e-45 186.4 177 79.7
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-45 186.0 110 81.8
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 2.8e-45 186.0 143 74.8
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 2.8e-45 186.0 156 72.4
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 4.7e-45 185.3 150 74.0
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 6.1e-45 184.9 148 66.9
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 8.0e-45 184.5 172 70.9
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 1.0e-44 184.1 153 64.7
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.0e-44 184.1 104 80.8
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.0e-44 184.1 162 77.8
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 1.0e-44 184.1 142 81.7
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.4e-44 183.7 147 77.6
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.4e-44 183.7 149 79.9
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.4e-44 183.7 106 81.1
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.0e-44 182.6 145 76.6
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 4.0e-44 182.2 155 72.9
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 6.8e-44 181.4 148 74.3
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-43 180.6 172 70.3
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-43 180.6 153 69.3
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 1.2e-43 180.6 106 81.1
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 1.5e-43 180.3 103 82.5
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.5e-43 180.3 140 82.9
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.5e-43 180.3 140 82.9
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 2.0e-43 179.9 146 75.3
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 2.0e-43 179.9 154 69.5
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.6e-43 179.5 104 78.8
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 3.4e-43 179.1 155 71.6
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.4e-43 179.1 146 72.6
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 3.4e-43 179.1 94 89.4
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 3.4e-43 179.1 144 77.8
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 7.5e-43 177.9 146 69.2
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.7e-42 176.8 154 68.8
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.7e-42 176.8 154 68.8
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.7e-42 176.8 154 68.8
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 3.7e-42 175.6 94 86.2
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.4e-41 173.7 89 92.1
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 9.2e-41 171.0 148 71.6
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 1.6e-40 170.2 85 92.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.6e-40 170.2 148 73.6
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 5.9e-40 168.3 154 70.1
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.3e-39 167.2 149 73.2
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 2.3e-39 166.4 87 87.4
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.9e-39 166.0 92 84.8
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.1e-37 158.3 145 70.3
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.6e-35 152.9 104 64.4
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 3.4e-35 152.5 79 88.6
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 3.9e-31 139.0 130 59.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 6.6e-31 138.3 146 67.8
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 7.3e-30 134.8 80 75.0
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.4e-28 130.6 165 61.2
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 7.5e-27 124.8 103 64.1
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.9e-25 120.2 76 63.2
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 2.4e-25 119.8 66 86.4
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 9.5e-22 107.8 94 53.2
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.2e-21 107.5 56 87.5
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 3.6e-21 105.9 96 58.3
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 1.7e-18 97.1 49 85.7
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 2.2e-18 96.7 108 51.9
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 3.7e-18 95.9 108 52.8
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 49 69.4
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 49 69.4
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 2.2e-10 70.1 55 65.5
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-09 67.8 49 67.3
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-09 67.8 49 67.3
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-09 67.8 49 67.3
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.4e-09 67.4 45 71.1
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 2.7e-08 63.2 38 78.9
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 5.1e-07 58.9 35 80.0


User provided reference genes

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