Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0188321 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-42 175.6 88 100.0
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-31 139.4 75 92.0
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-31 139.4 75 92.0
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-31 139.4 75 92.0
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.3e-31 139.4 75 92.0
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 1.3e-31 139.4 75 92.0
HanXRQChr00c0823g0577631 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-31 139.0 69 98.6
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 2.9e-31 138.3 75 90.7
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 4.9e-31 137.5 68 98.5
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 6.4e-31 137.1 68 97.1
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.1e-30 136.3 68 97.1
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 3.2e-30 134.8 68 95.6
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 4.2e-30 134.4 75 86.7
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 5.5e-30 134.0 68 94.1
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.5e-30 134.0 75 85.3
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.5e-30 134.0 75 85.3
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.5e-30 134.0 75 85.3
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.5e-30 134.0 75 85.3
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 7.1e-30 133.7 68 92.6
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 7.1e-30 133.7 68 92.6
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 7.1e-30 133.7 68 92.6
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 7.1e-30 133.7 68 92.6
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 7.1e-30 133.7 68 92.6
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.2e-29 132.9 68 94.1
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.6e-29 132.5 75 84.0
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.6e-29 132.5 70 87.1
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 2.1e-29 132.1 68 94.1
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 75 86.7
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 4.6e-29 131.0 75 86.7
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 4.6e-29 131.0 75 86.7
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 4.6e-29 131.0 75 86.7
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.6e-29 131.0 73 89.0
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 6.0e-29 130.6 68 91.2
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 6.0e-29 130.6 68 92.6
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 6.0e-29 130.6 68 89.7
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 6.0e-29 130.6 68 91.2
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 7.9e-29 130.2 75 85.3
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.0e-28 129.8 68 92.6
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 1.8e-28 129.0 68 91.2
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.8e-28 129.0 79 82.3
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 2.3e-28 128.6 75 82.7
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 3.9e-28 127.9 68 91.2
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 6.7e-28 127.1 68 88.2
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.5e-27 125.9 69 88.4
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 1.5e-27 125.9 68 89.7
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 1.5e-27 125.9 78 74.4
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.5e-27 125.2 68 88.2
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-27 125.2 60 100.0
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 7.4e-27 123.6 68 88.2
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.4e-27 123.6 68 88.2
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.6e-26 122.5 79 79.7
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.6e-26 122.5 68 85.3
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 1.6e-26 122.5 78 73.1
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 3.7e-26 121.3 68 83.8
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 6.2e-26 120.6 68 83.8
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 6.2e-26 120.6 68 83.8
TPR.G26480 Trifolium pratense HOM05D000216 ORTHO05D000634 6.2e-26 120.6 78 70.5
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.4e-25 118.6 68 85.3
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 5.3e-25 117.5 73 82.2
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 6.9e-25 117.1 75 73.3
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 6.9e-25 117.1 74 73.0
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 75 73.3
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.2e-24 116.3 75 73.3
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-24 115.5 68 82.4
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 2.6e-24 115.2 68 77.9
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 2.6e-24 115.2 68 77.9
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 2.6e-24 115.2 68 77.9
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 2.6e-24 115.2 68 77.9
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 2.6e-24 115.2 68 77.9
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 5.8e-24 114.0 56 96.4
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 7.6e-24 113.6 68 83.8
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.0e-23 113.2 68 83.8
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.0e-23 113.2 68 77.9
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 1.3e-23 112.8 73 78.1
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-23 112.8 56 94.6
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-23 112.5 60 91.7
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 2.2e-23 112.1 55 96.4
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 2.2e-23 112.1 58 89.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 3.8e-23 111.3 59 86.4
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 4.9e-23 110.9 59 86.4
Lalb_Chr06g0173101 Lupinus albus HOM05D000216 ORTHO05D000634 6.5e-23 110.5 68 79.4
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 6.5e-23 110.5 55 92.7
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 8.4e-23 110.2 55 94.5
Lalb_Chr13g0292901 Lupinus albus HOM05D000216 ORTHO05D000634 8.4e-23 110.2 59 88.1
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.1e-22 109.8 55 94.5
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 1.4e-22 109.4 59 83.1
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.4e-22 109.4 68 79.4
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 1.9e-22 109.0 59 84.7
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 3.2e-22 108.2 55 92.7
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 9.3e-22 106.7 56 87.5
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.1e-21 105.5 58 84.5
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 4.6e-21 104.4 53 90.6
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 6.1e-21 104.0 68 70.6
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 1.3e-20 102.8 51 92.2
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.9e-19 99.0 58 77.6
Gorai.002G075300 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.5e-19 98.6 50 92.0
arahy.Tifrunner.gnm1.ann1.EI2YTD Arachis hypogaea HOM05D000890 ORTHO05D000697 7.4e-19 97.1 55 81.8
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 9.7e-19 96.7 53 79.2
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.7e-18 94.7 61 75.4
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 9.0e-17 90.1 71 62.0
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 2.0e-16 89.0 62 72.6
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 5.9e-16 87.4 49 79.6
Lalb_Chr23g0274571 Lupinus albus HOM05D000216 ORTHO05D000634 1.3e-15 86.3 47 87.2
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.9e-15 85.1 49 79.6
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-13 79.7 54 66.7
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-10 69.7 33 100.0
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 3.7e-10 68.2 43 69.8
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 8.2e-10 67.0 46 71.7
Solyc05g020010.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 1.1e-09 66.6 38 81.6
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.8e-09 65.9 75 53.3
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 2.6e-08 62.0 69 47.8
CARHR056720 Cardamine hirsuta HOM05D000216 ORTHO05D000634 1.3e-07 59.7 28 100.0
Nitab4.5_0004184g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 9.4e-06 53.5 30 86.7


User provided reference genes

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