Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 0.0e+00 1456.0 717 100.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 0.0e+00 1137.1 637 86.8
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 696 75.9
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.7e-310 1068.9 696 73.7
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.9e-306 1055.4 685 74.2
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.5e-306 1055.0 634 78.9
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 5.5e-306 1053.9 633 79.0
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 5.5e-306 1053.9 701 73.6
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.6e-305 1051.2 711 71.6
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 7.5e-303 1043.5 670 74.8
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 2.4e-301 1038.5 664 75.2
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 5.0e-299 1030.8 693 71.6
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 4.3e-298 1027.7 664 74.2
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 7.3e-298 1026.9 627 77.0
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 1.2e-297 1026.2 655 74.4
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.1e-297 1025.4 655 74.2
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.4e-296 1022.7 655 73.9
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-296 1022.3 691 73.2
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.3e-296 1021.9 693 73.0
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 5.2e-296 1020.8 675 73.9
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.2e-295 1019.6 694 72.5
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.5e-295 1019.2 714 70.0
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 2.0e-295 1018.8 660 73.8
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 2.6e-295 1018.5 688 72.2
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 3.4e-295 1018.1 666 74.5
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 8.3e-294 1013.4 677 73.4
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 5.4e-293 1010.7 708 70.8
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 6.6e-291 1003.8 638 74.6
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 2.5e-290 1001.9 656 72.9
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 4.3e-290 1001.1 720 69.3
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 2.1e-289 998.8 696 71.4
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 3.6e-289 998.0 628 76.0
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 6.2e-289 997.3 632 74.7
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.0e-287 992.3 662 73.6
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 3.4e-287 991.5 636 73.4
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 9.8e-287 989.9 630 75.2
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.7e-286 989.2 718 68.1
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 3.7e-286 988.0 627 74.2
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.9e-285 985.7 677 70.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.7e-284 981.9 699 70.0
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 3.5e-284 981.5 701 69.2
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.1e-282 976.5 726 67.6
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 7.3e-282 973.8 675 70.8
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 8.1e-281 970.3 706 67.8
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 6.8e-280 967.2 651 70.4
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.2e-279 966.5 715 68.0
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 7.5e-279 963.8 700 68.3
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 9.9e-279 963.4 631 74.2
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.3e-278 963.0 690 67.8
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 6.4e-278 960.7 689 68.4
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 2.7e-276 955.3 750 64.5
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 3.3e-274 948.3 690 67.1
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 4.3e-274 948.0 690 67.1
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 9.5e-274 946.8 625 72.6
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.2e-273 946.4 704 66.6
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.1e-272 943.3 635 70.9
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 5.8e-271 937.6 703 66.6
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 5.8e-271 937.6 703 66.6
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 5.8e-271 937.6 703 66.6
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 5.8e-271 937.6 636 70.6
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 7.6e-271 937.2 575 77.0
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.7e-270 936.0 632 69.9
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 3.8e-270 934.9 688 65.4
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 6.4e-270 934.1 632 70.7
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.4e-269 932.9 631 70.8
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 3.2e-269 931.8 640 69.8
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.1e-268 929.1 696 67.7
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-268 928.3 645 69.5
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 6.0e-268 927.5 645 69.5
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.3e-267 925.6 645 69.3
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 3.9e-267 924.9 700 65.9
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 6.6e-267 924.1 699 66.0
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.9e-266 922.5 608 72.4
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 3.3e-266 921.8 699 65.5
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 3.4e-263 911.8 711 64.6
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 9.9e-263 910.2 641 68.3
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 3.8e-262 908.3 636 70.0
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 6.4e-262 907.5 709 63.9
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.9e-261 906.0 689 64.6
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 7.8e-260 900.6 720 63.2
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.9e-258 896.0 690 63.2
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 4.3e-258 894.8 682 64.2
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 5.6e-258 894.4 639 67.4
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 5.6e-258 894.4 706 64.3
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 3.6e-257 891.7 665 67.1
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 3.6e-257 891.7 631 68.9
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.4e-256 889.0 631 68.8
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 5.3e-256 887.9 699 64.4
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 6.9e-256 887.5 551 77.0
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.5e-255 886.3 610 73.3
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.0e-255 885.9 704 63.8
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 9.3e-253 877.1 643 65.3
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.3e-253 877.1 670 65.2
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 3.5e-252 875.2 706 63.5
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 2.5e-250 869.0 683 64.0
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.8e-249 865.5 683 63.8
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.1e-248 863.6 670 64.6
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.5e-247 859.8 718 61.4
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.4e-246 854.4 726 61.0
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 3.7e-241 838.6 667 64.9
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.7e-236 822.4 767 57.2
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.8e-235 819.7 704 60.7
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.5e-231 806.6 687 57.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 6.7e-227 791.2 642 58.4
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.5e-226 789.3 689 60.7
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.1e-224 783.9 702 58.0
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.4e-224 782.7 655 60.6
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.5e-223 780.0 676 59.2
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 7.4e-218 761.1 633 58.1
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.0e-215 753.1 544 69.1
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.0e-214 750.7 704 55.0
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.8e-214 748.8 565 64.8
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 6.5e-214 748.0 664 54.2
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 5.2e-211 738.4 695 57.6
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.9e-205 719.9 579 63.0
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 4.2e-205 718.8 504 71.2
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.0e-203 712.6 686 55.5
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.7e-199 698.0 701 53.4
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 3.3e-189 666.0 434 72.8
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.6e-186 656.4 595 55.8
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 5.7e-186 655.2 463 69.5
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.2e-183 647.5 454 72.0
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.9e-182 642.9 660 51.8
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 2.6e-178 629.8 495 65.3
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 4.4e-178 629.0 435 70.8
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.0e-174 616.3 429 68.3
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.5e-173 614.0 463 65.7
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.4e-171 607.4 436 66.5
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.4e-170 602.8 489 62.8
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.9e-165 587.0 687 46.6
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 2.4e-152 543.5 738 41.1
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.9e-145 519.2 646 42.0
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 6.0e-135 485.7 678 40.3
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 7.9e-135 485.3 482 54.1
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.8e-134 484.2 495 52.7
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.2e-122 444.9 631 38.7
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 7.4e-117 425.6 331 62.8
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.6e-106 390.6 446 48.2
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 2.3e-94 350.9 188 84.0
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 3.9e-94 350.1 226 73.9
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 2.0e-90 337.8 184 81.5
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 5.9e-90 336.3 193 80.8
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.7e-84 317.0 169 84.0
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.5e-77 295.0 189 72.5
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 4.4e-77 293.5 172 83.1
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.9e-76 290.0 185 70.8
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.4e-75 288.5 185 70.3
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.9e-72 278.1 156 75.6
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 2.3e-70 271.2 185 68.6
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 3.6e-63 247.3 136 79.4
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.0e-62 245.7 178 65.2
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-54 218.8 151 67.5
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.6e-49 199.5 103 83.5
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 9.9e-45 186.0 111 80.2
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 5.4e-43 180.3 113 74.3
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 6.2e-39 166.8 83 89.2
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.9e-33 147.5 105 69.5
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 4.3e-32 144.1 79 81.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 8.4e-28 129.8 72 83.3
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 3.5e-26 124.4 110 56.4
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.0e-25 122.9 76 73.7
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 2.4e-22 111.7 148 43.9
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 3.1e-22 111.3 72 69.4
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 2.6e-21 108.2 69 66.7
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 6.5e-12 77.0 53 64.2
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.9e-11 75.5 50 66.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 4.6e-10 70.9 44 68.2
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 2.3e-09 68.6 46 65.2
Sabra01G0062700 Salix brachista HOM05D000645 ORTHO05D000494 7.4e-08 63.5 361 23.3


User provided reference genes

Program Settings