Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0163171 Helianthus annuus HOM05D000142 ORTHO05D003173 2.1e-80 302.4 160 100.0
Lsat_1_v5_gn_6_104200 Lactuca sativa HOM05D000142 ORTHO05D003173 4.3e-49 198.4 166 70.5
Oeu029731.1 Olea europaea HOM05D000142 ORTHO05D003173 1.0e-34 150.6 161 55.3
GSVIVG01009091001 Vitis vinifera HOM05D000142 ORTHO05D003173 1.5e-30 136.7 158 50.6
Dinv07079 Davidia involucrata HOM05D000142 ORTHO05D003173 2.0e-30 136.3 171 50.3
Lj4A727T38 Lonicera japonica HOM05D000142 ORTHO05D003173 1.3e-29 133.7 157 51.0
Nitab4.5_0009374g0020 Nicotiana tabacum HOM05D000142 ORTHO05D003173 1.9e-28 129.8 162 50.0
Migut.N02875 Erythranthe guttata HOM05D000142 ORTHO05D003173 3.2e-28 129.0 155 52.3
CSS0025684 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D003173 9.3e-28 127.5 180 44.4
vmacro21285 Vaccinium macrocarpon HOM05D000142 ORTHO05D003173 1.6e-27 126.7 177 46.3
ECA246G3305 Erigeron canadensis HOM05D000142 ORTHO05D003173 2.7e-27 125.9 154 52.6
Nitab4.5_0003374g0010 Nicotiana tabacum HOM05D000142 ORTHO05D003173 7.9e-27 124.4 145 51.0
Atru.chr10.807 Acer truncatum HOM05D000142 ORTHO05D003173 1.3e-26 123.6 161 46.0
Cc00_g22260 Coffea canephora HOM05D000142 ORTHO05D003173 2.3e-26 122.9 169 49.1
SGA_v2.0_scaffold28G11896 Striga asiatica HOM05D000142 ORTHO05D003173 5.1e-26 121.7 140 52.1
PSO541G2771 Papaver somniferum HOM05D000142 ORTHO05D003173 6.7e-26 121.3 133 54.1
Peaxi162Scf00139g00013 Petunia axillaris HOM05D000142 ORTHO05D003173 8.7e-26 120.9 152 47.4
DCAR_012880 Daucus carota HOM05D000142 ORTHO05D003173 1.1e-25 120.6 152 50.7
PSO675G4478 Papaver somniferum HOM05D000142 ORTHO05D003173 1.5e-25 120.2 133 53.4
PGSC0003DMG400030840 Solanum tuberosum HOM05D000142 ORTHO05D003173 1.5e-25 120.2 157 48.4
MSTRG.24440 Avicennia marina HOM05D000142 ORTHO05D003173 1.3e-24 117.1 120 55.0
CsaV3_3G047760 Cucumis sativus L. HOM05D000142 ORTHO05D003173 1.3e-24 117.1 161 46.6
Sabra05G0122100 Salix brachista HOM05D000142 ORTHO05D003173 2.1e-24 116.3 135 49.6
PGR031G2006 Punica granatum HOM05D000142 ORTHO05D003173 3.7e-24 115.5 159 47.2
COL.COLO4_11999 Corchorus olitorius HOM05D000142 ORTHO05D003173 6.2e-24 114.8 147 48.3
Lj4A96T44 Lonicera japonica HOM05D000142 ORTHO05D003173 6.2e-24 114.8 66 77.3
COL.COLO4_12000 Corchorus olitorius HOM05D000142 ORTHO05D003173 1.1e-23 114.0 147 46.9
Sc10g0005170 Simmondsia chinensis HOM05D000142 ORTHO05D003173 1.1e-23 114.0 152 48.0
Potri.005G161000 Populus trichocarpa HOM05D000142 ORTHO05D003173 1.4e-23 113.6 157 43.9
Sopen00g007220 Solanum pennellii HOM05D000142 ORTHO05D003173 1.4e-23 113.6 157 46.5
Sopen04g029720 Solanum pennellii HOM05D000142 ORTHO05D003173 1.4e-23 113.6 157 46.5
Cfa017897 Carpinus fangiana HOM05D000142 ORTHO05D003173 2.4e-23 112.8 168 43.5
Thecc.08G101100 Theobroma cacao HOM05D000142 ORTHO05D003173 3.1e-23 112.5 87 62.1
Glyma.06G100200 Glycine max HOM05D000142 ORTHO05D003173 4.0e-23 112.1 155 44.5
Gorai.002G141400 Gossypium raimondii HOM05D000142 ORTHO05D003173 4.0e-23 112.1 146 47.9
Duzib093G0467 Durio zibethinus HOM05D000142 ORTHO05D003173 5.3e-23 111.7 152 46.1
Gohir.A01G128000 Gossypium hirsutum HOM05D000142 ORTHO05D003173 5.3e-23 111.7 126 49.2
CiPaw.16G032600 Carya illinoinensis HOM05D000142 ORTHO05D003173 6.9e-23 111.3 99 54.5
TWI56G0053 Tripterygium wilfordii HOM05D000142 ORTHO05D003173 6.9e-23 111.3 151 45.7
Manes.18G063201 Manihot esculenta HOM05D000142 ORTHO05D003173 1.2e-22 110.5 145 46.2
Prupe.1G523800 Prunus persica HOM05D000142 ORTHO05D003173 1.2e-22 110.5 103 56.3
Ciclev10001605m.g Citrus clementina HOM05D000142 ORTHO05D003173 1.5e-22 110.2 169 37.9
Cc00_g29680 Coffea canephora HOM05D000142 ORTHO05D003173 1.5e-22 110.2 107 55.1
QL02p002278 Quercus lobata HOM05D000142 ORTHO05D003173 1.5e-22 110.2 162 42.0
Solyc04g074750.3 Solanum lycopersicum HOM05D000142 ORTHO05D003173 2.0e-22 109.8 157 45.2
Haze_18253 Corylus avellana HOM05D000142 ORTHO05D003173 3.4e-22 109.0 170 41.8
Eucgr.B00046 Eucalyptus grandis HOM05D000142 ORTHO05D003173 3.4e-22 109.0 170 44.1
Phvul.009G033600 Phaseolus vulgaris HOM05D000142 ORTHO05D003173 3.4e-22 109.0 152 44.1
ClCG11G014360 Citrullus lanatus HOM05D000142 ORTHO05D003173 4.5e-22 108.6 173 42.2
arahy.Tifrunner.gnm1.ann1.X035RS Arachis hypogaea HOM05D000142 ORTHO05D003173 5.8e-22 108.2 165 44.2
Gohir.D01G115900 Gossypium hirsutum HOM05D000142 ORTHO05D003173 5.8e-22 108.2 143 49.0
CANSAT25G3832 Cannabis sativa HOM05D000142 ORTHO05D003173 7.6e-22 107.8 154 46.1
MELO3C003546.2 Cucumis melo HOM05D000142 ORTHO05D003173 7.6e-22 107.8 154 46.8
CiPaw.15G045300 Carya illinoinensis HOM05D000142 ORTHO05D003173 9.9e-22 107.5 158 42.4
EL10Ac1g01139 Beta vulgaris HOM05D000142 ORTHO05D003173 1.7e-21 106.7 151 46.4
Nn5g29983 Nelumbo nucifera HOM05D000142 ORTHO05D003173 1.7e-21 106.7 132 46.2
Psat5g050360 Pisum sativum HOM05D000142 ORTHO05D003173 1.7e-21 106.7 147 46.3
TAR381G0467 Trochodendron aralioides HOM05D000142 ORTHO05D003173 2.2e-21 106.3 164 44.5
AUR62018978 Chenopodium quinoa HOM05D000142 ORTHO05D003173 2.9e-21 105.9 153 45.8
MBI06_g03315_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D003173 2.9e-21 105.9 154 48.1
Aqoxy6G00706 Aquilegia oxysepala HOM05D000142 ORTHO05D003173 3.8e-21 105.5 155 41.3
Aa31LG9G14720 Aethionema arabicum HOM05D000142 ORTHO05D003173 4.9e-21 105.1 143 45.5
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 6.4e-21 104.8 69 69.6
Sed0024077 Sechium edule HOM05D000142 ORTHO05D003173 6.4e-21 104.8 166 41.6
FvH4_5g36390 Fragaria vesca HOM05D000142 ORTHO05D003173 1.1e-20 104.0 134 47.8
FAN18G3254 Fragaria x ananassa HOM05D000142 ORTHO05D003173 1.1e-20 104.0 134 47.8
Os08g0483200 Oryza sativa ssp. japonica HOM05D000142 ORTHO05D003173 1.1e-20 104.0 67 68.7
Carub.0006s2763 Capsella rubella HOM05D000142 ORTHO05D003173 1.9e-20 103.2 155 44.5
VMungo1309G2392 Vigna mungo HOM05D000142 ORTHO05D003173 1.9e-20 103.2 159 40.3
unitig_22.g5802 Utricularia gibba HOM05D000142 ORTHO05D003173 2.5e-20 102.8 145 47.6
MD08G1189900 Malus domestica HOM05D000142 ORTHO05D003173 3.2e-20 102.4 68 69.1
TPR.G6340 Trifolium pratense HOM05D000142 ORTHO05D003173 3.2e-20 102.4 66 72.7
FAN04G2990 Fragaria x ananassa HOM05D000142 ORTHO05D003173 4.2e-20 102.1 128 48.4
RcHm_v2.0_Chr7g0238361 Rosa chinensis HOM05D000142 ORTHO05D003173 4.2e-20 102.1 132 47.0
Glyma.04G098600 Glycine max HOM05D000142 ORTHO05D003173 5.5e-20 101.7 151 43.0
Lalb_Chr23g0270221 Lupinus albus HOM05D000142 ORTHO05D003173 5.5e-20 101.7 68 69.1
Lalb_Chr23g0270321 Lupinus albus HOM05D000142 ORTHO05D003173 5.5e-20 101.7 68 69.1
AL6G41450 Arabidopsis lyrata HOM05D000142 ORTHO05D003173 7.1e-20 101.3 139 43.2
CDE10G0261 Ceratophyllum demersum HOM05D000142 ORTHO05D003173 7.1e-20 101.3 68 64.7
FAN13G0478 Fragaria x ananassa HOM05D000142 ORTHO05D003173 7.1e-20 101.3 133 45.9
BcaB01g01379 Brassica carinata HOM05D000142 ORTHO05D003173 9.3e-20 100.9 123 47.2
A09p29590 Brassica napus HOM05D000142 ORTHO05D003173 2.7e-19 99.4 125 48.0
BraA09t38528Z Brassica rapa HOM05D000142 ORTHO05D003173 2.7e-19 99.4 125 48.0
Sp6g08470 Schrenkiella parvula HOM05D000142 ORTHO05D003173 2.7e-19 99.4 140 44.3
Hund26993 Selenicereus undatus HOM05D000142 ORTHO05D003173 2.7e-19 99.4 154 44.2
Ah.05g169610 Amaranthus hybridus HOM05D000142 ORTHO05D003173 3.5e-19 99.0 128 47.7
Lalb_Chr11g0065251 Lupinus albus HOM05D000142 ORTHO05D003173 4.6e-19 98.6 143 44.1
THA.LOC104806797 Tarenaya hassleriana HOM05D000142 ORTHO05D003173 4.6e-19 98.6 158 42.4
Medtr3g099590 Medicago truncatula HOM05D000142 ORTHO05D003173 7.9e-19 97.8 124 47.6
Lj1g0017532 Lotus japonicus HOM05D000142 ORTHO05D003173 1.0e-18 97.4 69 63.8
CARHR260100 Cardamine hirsuta HOM05D000142 ORTHO05D003173 1.3e-18 97.1 91 56.0
BcaC04g20945 Brassica carinata HOM05D000142 ORTHO05D003173 1.8e-18 96.7 129 45.0
C09p37660 Brassica napus HOM05D000142 ORTHO05D003173 1.8e-18 96.7 129 45.0
BolC9t56596H Brassica oleracea HOM05D000142 ORTHO05D003173 1.8e-18 96.7 129 45.0
CiPaw.15G147100 Carya illinoinensis HOM05D000142 ORTHO05D003173 3.0e-18 95.9 101 45.5
arahy.Tifrunner.gnm1.ann1.DQ4GV3 Arachis hypogaea HOM05D000142 ORTHO05D003173 5.1e-18 95.1 187 40.6
AT4G09040 Arabidopsis thaliana HOM05D000142 ORTHO05D003173 1.1e-17 94.0 138 40.6
Ca_16034_v3 Cicer arietinum L. HOM05D000142 ORTHO05D003173 5.6e-17 91.7 109 49.5
Thhalv10028847m.g Eutrema salsugineum HOM05D000142 ORTHO05D003173 6.2e-16 88.2 130 46.2
CANSAT21G0195 Cannabis sativa HOM05D000142 ORTHO05D003173 1.8e-15 86.7 90 48.9
ATR0684G236 Amborella trichopoda HOM05D000142 ORTHO05D003173 4.5e-14 82.0 140 35.0
CANSAT21G0512 Cannabis sativa HOM05D000142 ORTHO05D003173 1.1e-12 77.4 171 33.3
CSS0015928 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D003173 3.0e-10 69.3 155 38.7
CSS0014445 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D003173 6.7e-10 68.2 155 38.7
Nitab4.5_0006453g0020 Nicotiana tabacum HOM05D000142 ORTHO05D003173 1.1e-09 67.4 155 34.8
SGA_v2.0_scaffold36G14309 Striga asiatica HOM05D000142 ORTHO05D003173 3.3e-09 65.9 122 37.7
FAN08G0302 Fragaria x ananassa HOM05D000142 ORTHO05D003173 7.4e-09 64.7 44 65.9
TAR375G0415 Trochodendron aralioides HOM05D000142 ORTHO05D003173 7.4e-09 64.7 148 34.5
Cc08_g02910 Coffea canephora HOM05D000142 ORTHO05D003173 9.7e-09 64.3 156 34.0
CiPaw.11G094600 Carya illinoinensis HOM05D000142 ORTHO05D003173 1.3e-08 63.9 142 35.9
MD06G1035700 Malus domestica HOM05D000142 ORTHO05D003173 1.3e-08 63.9 145 35.2
PGR031G1255 Punica granatum HOM05D000142 ORTHO05D003173 1.3e-08 63.9 153 35.3
HPP92_020965 Vanilla planifolia HOM05D000142 ORTHO05D003173 1.3e-08 63.9 114 37.7
ATR0665G230 Amborella trichopoda HOM05D000142 ORTHO05D003173 1.6e-08 63.5 68 41.2
Lsat_1_v5_gn_6_4121 Lactuca sativa HOM05D000142 ORTHO05D003173 1.6e-08 63.5 103 37.9
Manes.17G010200 Manihot esculenta HOM05D000142 ORTHO05D003173 2.8e-08 62.8 155 34.2
Sc01g0007390 Simmondsia chinensis HOM05D000142 ORTHO05D003173 2.8e-08 62.8 120 38.3
Hma1.2p1_1180F.1_g264690 Hydrangea macrophylla HOM05D000142 ORTHO05D003173 3.7e-08 62.4 34 82.4
Gohir.A03G000053 Gossypium hirsutum HOM05D000142 ORTHO05D003173 4.8e-08 62.0 65 43.1
Lalb_Chr05g0215971 Lupinus albus HOM05D000142 ORTHO05D003173 6.3e-08 61.6 118 33.9
Dinv28967 Davidia involucrata HOM05D000142 ORTHO05D003173 8.2e-08 61.2 97 37.1
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 8.2e-08 61.2 65 43.1
Solyc08g076840.3 Solanum lycopersicum HOM05D000142 ORTHO05D003173 1.1e-07 60.8 151 32.5
PSO782G4960 Papaver somniferum HOM05D000142 ORTHO05D003173 1.4e-07 60.5 150 30.0
Sabra01G0109900 Salix brachista HOM05D000142 ORTHO05D003173 1.4e-07 60.5 143 32.9
Hma1.2p1_0574F.1_g181540 Hydrangea macrophylla HOM05D000142 ORTHO05D003173 2.4e-07 59.7 96 35.4
Hma1.2p1_1379F.1_g279190 Hydrangea macrophylla HOM05D000142 ORTHO05D003173 2.4e-07 59.7 96 35.4
Sopen08g025360 Solanum pennellii HOM05D000142 ORTHO05D003173 2.4e-07 59.7 149 34.9
DCAR_004294 Daucus carota HOM05D000142 ORTHO05D003173 3.1e-07 59.3 151 31.8
Nn6g33572 Nelumbo nucifera HOM05D000142 ORTHO05D003173 4.1e-07 58.9 155 32.3
ClCG10G001490 Citrullus lanatus HOM05D000142 ORTHO05D003173 5.3e-07 58.5 152 31.6
TAR374G1376 Trochodendron aralioides HOM05D000142 ORTHO05D003173 5.3e-07 58.5 95 36.8
Glyma.09G205500 Glycine max HOM05D000142 ORTHO05D003173 6.9e-07 58.2 81 42.0
Prupe.5G034000 Prunus persica HOM05D000142 ORTHO05D003173 6.9e-07 58.2 160 31.2
Eucgr.D02207 Eucalyptus grandis HOM05D000142 ORTHO05D003173 9.0e-07 57.8 124 32.3
Gorai.007G032500 Gossypium raimondii HOM05D000142 ORTHO05D003173 9.0e-07 57.8 151 31.1
Potri.001G141300 Populus trichocarpa HOM05D000142 ORTHO05D003173 9.0e-07 57.8 143 32.2
GSVIVG01013146001 Vitis vinifera HOM05D000142 ORTHO05D003173 9.0e-07 57.8 95 36.8
Zm00001eb072370 Zea mays HOM05D000142 ORTHO05D003173 9.0e-07 57.8 128 33.6
RcHm_v2.0_Chr7g0210041 Rosa chinensis HOM05D000142 ORTHO05D003173 1.2e-06 57.4 78 38.5
vmacro00322 Vaccinium macrocarpon HOM05D000142 ORTHO05D003173 1.2e-06 57.4 135 32.6
PSO063G1565 Papaver somniferum HOM05D000142 ORTHO05D003173 1.5e-06 57.0 152 28.9
PGSC0003DMG400017519 Solanum tuberosum HOM05D000142 ORTHO05D003173 1.5e-06 57.0 149 33.6
HPP92_022110 Vanilla planifolia HOM05D000142 ORTHO05D003173 1.5e-06 57.0 149 32.2
Ah.07g200540 Amaranthus hybridus HOM05D000142 ORTHO05D003173 2.0e-06 56.6 138 31.9
Glyma.01G017400 Glycine max HOM05D000142 ORTHO05D003173 2.0e-06 56.6 63 44.4
Thecc.03G225700 Theobroma cacao HOM05D000142 ORTHO05D003173 2.0e-06 56.6 153 33.3
Cfa012454 Carpinus fangiana HOM05D000142 ORTHO05D003173 2.6e-06 56.2 151 31.1
Sp4g17630 Schrenkiella parvula HOM05D000142 ORTHO05D003173 2.6e-06 56.2 164 32.3
BolC4t27916H Brassica oleracea HOM05D000142 ORTHO05D003173 3.4e-06 55.8 161 31.7
BraA04t18189Z Brassica rapa HOM05D000142 ORTHO05D003173 3.4e-06 55.8 121 30.6
CANSAT21G2381 Cannabis sativa HOM05D000142 ORTHO05D003173 3.4e-06 55.8 68 42.6
Ca_25202_v3 Cicer arietinum L. HOM05D000142 ORTHO05D003173 3.4e-06 55.8 139 29.5
Gohir.A11G031000 Gossypium hirsutum HOM05D000142 ORTHO05D003173 3.4e-06 55.8 153 32.0
BcaB06g28841 Brassica carinata HOM05D000142 ORTHO05D003173 4.5e-06 55.5 96 32.3
Cpa.g.sc665.1 Carica papaya HOM05D000142 ORTHO05D003173 4.5e-06 55.5 153 30.1
CiPaw.12G064600 Carya illinoinensis HOM05D000142 ORTHO05D003173 4.5e-06 55.5 95 34.7
FAN08G1774 Fragaria x ananassa HOM05D000142 ORTHO05D003173 4.5e-06 55.5 64 42.2
FAN13G0205 Fragaria x ananassa HOM05D000142 ORTHO05D003173 4.5e-06 55.5 64 42.2
ECA246G0701 Erigeron canadensis HOM05D000142 ORTHO05D003173 5.9e-06 55.1 136 30.9
FvH4_5g22330 Fragaria vesca HOM05D000142 ORTHO05D003173 5.9e-06 55.1 64 42.2
Gohir.D11G029700 Gossypium hirsutum HOM05D000142 ORTHO05D003173 5.9e-06 55.1 151 30.5
Sed0006524 Sechium edule HOM05D000142 ORTHO05D003173 5.9e-06 55.1 120 31.7
AT2G35410 Arabidopsis thaliana HOM05D000142 ORTHO05D003173 7.7e-06 54.7 65 38.5
BcaC02g07715 Brassica carinata HOM05D000142 ORTHO05D003173 7.7e-06 54.7 159 30.2
A04p26900 Brassica napus HOM05D000142 ORTHO05D003173 7.7e-06 54.7 161 31.1
C04p64290 Brassica napus HOM05D000142 ORTHO05D003173 7.7e-06 54.7 161 31.1
CARHR129560 Cardamine hirsuta HOM05D000142 ORTHO05D003173 7.7e-06 54.7 160 30.0
Duzib068G0809 Durio zibethinus HOM05D000142 ORTHO05D003173 7.7e-06 54.7 91 36.3
Duzib068G0998 Durio zibethinus HOM05D000142 ORTHO05D003173 7.7e-06 54.7 91 36.3
ECA233G6107 Erigeron canadensis HOM05D000142 ORTHO05D003173 7.7e-06 54.7 152 29.6
CANSAT11G1739 Cannabis sativa HOM05D001495 ORTHO05D001391 1.0e-05 54.3 69 39.1
Carub.0004s1709 Capsella rubella HOM05D000142 ORTHO05D003173 1.0e-05 54.3 65 38.5
MELO3C013843.2 Cucumis melo HOM05D000142 ORTHO05D003173 1.0e-05 54.3 154 29.9
HanXRQChr13g0395131 Helianthus annuus HOM05D000142 ORTHO05D003173 1.0e-05 54.3 97 32.0
TWI81G0579 Tripterygium wilfordii HOM05D000142 ORTHO05D003173 1.0e-05 54.3 145 30.3
VMungo1215G2702 Vigna mungo HOM05D000142 ORTHO05D003173 1.0e-05 54.3 143 29.4


User provided reference genes

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