Gene: Sopen08g025360

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g025360
  • Transcript Identifier Sopen08g025360.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 65121812-65129921 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g025360.1

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | LOCATED IN: thylakoid, chloroplast stroma, chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G35410

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT2G35410
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT2G35410
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT2G35410

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.11.2.4 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP33b)