Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 0.0e+00 1763.4 963 100.0
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 0.0e+00 1258.8 882 76.1
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 0.0e+00 1257.3 873 77.7
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 3.1e-304 1048.5 841 66.6
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 2.6e-303 1045.4 828 66.9
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 3.1e-296 1021.9 814 66.5
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 6.3e-289 997.7 805 66.0
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 2.4e-288 995.7 800 64.9
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 1.5e-285 986.5 829 63.2
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 3.3e-285 985.3 908 60.7
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 9.5e-285 983.8 815 63.8
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 1.4e-283 979.9 800 64.1
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.2e-282 976.9 907 59.6
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 1.3e-281 973.4 823 63.1
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.2e-281 972.6 890 61.0
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 1.4e-280 969.9 807 64.3
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 9.2e-280 967.2 958 57.9
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.6e-279 966.5 911 59.8
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.7e-279 965.7 814 62.0
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 3.5e-279 965.3 1001 59.6
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 5.9e-279 964.5 833 61.8
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 1.3e-278 963.4 884 60.7
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.7e-278 963.0 821 61.8
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 6.6e-278 961.1 976 56.6
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 4.3e-277 958.4 799 63.7
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 5.6e-277 958.0 814 62.4
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 9.5e-277 957.2 813 63.3
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 6.1e-276 954.5 818 62.8
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 1.0e-275 953.7 877 60.4
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 3.1e-275 952.2 899 59.7
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 9.8e-274 947.2 910 57.8
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 3.7e-273 945.3 824 62.1
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 1.9e-272 943.0 877 59.9
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 9.2e-272 940.6 800 62.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.7e-270 936.4 900 58.3
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.7e-270 936.4 805 62.7
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 2.3e-270 936.0 1003 58.2
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 3.3e-269 932.2 840 60.0
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 5.6e-269 931.4 814 61.4
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 2.1e-268 929.5 888 58.2
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 6.2e-268 927.9 895 57.8
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 1.1e-267 927.2 837 59.9
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 1.1e-267 927.2 869 60.0
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 5.2e-267 924.9 885 58.1
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 6.8e-267 924.5 842 59.9
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 8.9e-267 924.1 890 58.2
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.7e-265 919.8 884 58.4
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 8.3e-265 917.5 844 59.0
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 1.9e-264 916.4 917 56.5
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 4.1e-264 915.2 888 57.7
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 7.0e-264 914.4 1009 58.1
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 1.6e-263 913.3 827 59.4
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 8.6e-262 907.5 800 59.9
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 1.9e-261 906.4 910 55.7
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.9e-261 906.4 887 57.8
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 3.6e-260 902.1 801 61.5
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 1.8e-259 899.8 801 60.4
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 1.2e-258 897.1 808 60.8
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 5.8e-258 894.8 899 56.2
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 6.4e-257 891.3 932 55.4
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 1.4e-256 890.2 837 57.6
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.4e-256 889.4 942 54.0
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 2.7e-255 885.9 1030 51.7
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 1.1e-253 880.6 882 56.3
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 3.3e-253 879.0 745 63.2
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 4.7e-252 875.2 835 58.2
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 6.2e-252 874.8 840 58.1
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 6.8e-251 871.3 872 56.5
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 5.8e-250 868.2 840 57.3
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.7e-249 866.7 894 55.6
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 4.2e-248 862.1 893 55.1
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 9.3e-248 860.9 973 55.8
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 1.2e-247 860.5 741 61.5
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 2.3e-246 856.3 865 55.7
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 8.7e-246 854.4 698 64.8
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 9.6e-245 850.9 842 56.2
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 6.2e-244 848.2 809 57.6
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 6.9e-243 844.7 869 54.9
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 8.4e-241 837.8 874 55.3
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 2.1e-239 833.2 875 54.4
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 7.8e-239 831.2 875 54.3
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 1.0e-238 830.9 872 54.5
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 5.6e-237 825.1 861 54.9
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 5.6e-237 825.1 903 53.0
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 5.6e-237 825.1 861 54.9
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 2.8e-236 822.8 923 53.0
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 3.6e-236 822.4 864 54.3
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 1.2e-234 817.4 861 54.7
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 4.5e-234 815.5 834 55.3
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 9.3e-232 807.7 741 59.1
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 3.9e-230 802.4 805 55.3
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 5.1e-230 802.0 797 52.3
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 4.3e-229 798.9 908 51.9
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 2.2e-225 786.6 859 54.0
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 1.8e-222 776.9 889 52.2
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 1.1e-216 757.7 741 55.7
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 1.0e-206 724.5 893 48.3
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 7.4e-205 718.4 753 53.8
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 1.5e-168 597.8 839 45.2
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 2.0e-154 550.8 848 42.3
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 2.3e-153 547.4 530 57.2
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 3.6e-151 540.0 842 42.3
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 2.3e-142 510.8 836 41.1
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 2.8e-135 487.3 664 46.1
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 1.3e-132 478.4 571 50.6
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 4.2e-123 446.8 354 62.1
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 1.5e-117 428.3 439 52.4
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.2e-85 322.4 415 46.7
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 5.9e-85 320.1 226 71.7
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 4.2e-83 313.9 1012 29.8
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 4.1e-62 244.2 733 30.7
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 8.6e-52 209.9 194 59.3
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 3.6e-42 177.9 106 80.2
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 2.3e-41 175.3 280 40.0
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 2.0e-40 172.2 107 75.7
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 4.1e-38 164.5 345 39.4
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 8.9e-33 146.7 233 40.3
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 9.2e-30 136.7 163 47.9
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 1.4e-25 122.9 101 63.4
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.3e-23 116.3 325 32.9
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 4.6e-21 107.8 73 71.2
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.1e-11 76.6 227 33.5
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 5.6e-11 74.3 46 76.1
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 4.8e-10 71.2 128 35.9
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 8.1e-10 70.5 102 37.3
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.8e-09 69.3 95 38.9
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 9.0e-09 67.0 89 40.4
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 9.0e-09 67.0 125 35.2
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 1.2e-08 66.6 86 48.8
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 1.5e-08 66.2 129 30.2
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.5e-08 66.2 95 37.9
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 4.5e-08 64.7 111 33.3
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 4.5e-08 64.7 168 31.0
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 7.6e-08 63.9 89 40.4
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 7.6e-08 63.9 93 38.7
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.7e-07 62.8 91 41.8
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 1.7e-07 62.8 101 35.6
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 3.8e-07 61.6 89 40.4
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 4.9e-07 61.2 109 34.9
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 4.9e-07 61.2 98 33.7
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 6.4e-07 60.8 129 30.2
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 8.4e-07 60.5 66 42.4
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 8.4e-07 60.5 64 43.8
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 1.1e-06 60.1 64 42.2
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.1e-06 60.1 102 36.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.4e-06 59.7 99 36.4
HPP92_003096 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.4e-06 59.7 140 33.6
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 2.4e-06 58.9 95 35.8
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 2.4e-06 58.9 130 30.8
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.4e-06 58.9 100 35.0
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 3.2e-06 58.5 100 35.0
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 4.2e-06 58.2 115 30.4
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 5.4e-06 57.8 102 33.3
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 7.1e-06 57.4 70 38.6


User provided reference genes

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