Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 3.8e-84 315.5 224 100.0
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 5.7e-24 115.5 165 61.2
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.7e-23 114.0 142 53.5
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 8.2e-23 111.7 173 59.5
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.1e-22 111.3 108 57.4
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.3e-22 109.0 139 51.8
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 9.1e-22 108.2 149 55.7
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.2e-21 107.8 149 55.7
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 1.2e-21 107.8 142 55.6
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 1.2e-21 107.8 142 55.6
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 2.7e-21 106.7 184 48.9
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.7e-21 106.7 142 54.9
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.7e-21 105.1 162 55.6
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.3e-20 104.4 167 51.5
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 6.5e-20 102.1 168 56.5
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 8.5e-20 101.7 171 53.8
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.1e-19 101.3 107 54.2
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.5e-19 100.9 142 52.8
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 3.2e-19 99.8 136 50.7
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 3.2e-19 99.8 132 55.3
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 7.2e-19 98.6 107 52.3
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 7.2e-19 98.6 141 55.3
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 7.2e-19 98.6 156 48.7
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 9.4e-19 98.2 131 54.2
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 9.4e-19 98.2 163 48.5
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 9.4e-19 98.2 132 53.0
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.2e-18 97.8 135 51.9
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.2e-18 97.8 164 55.5
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.6e-18 97.4 131 48.1
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.6e-18 97.4 171 55.6
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.6e-18 97.4 131 52.7
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.6e-18 97.4 132 50.8
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.6e-18 97.4 172 54.7
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.6e-18 97.4 108 50.0
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-18 97.1 164 54.9
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-18 97.1 164 54.9
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 2.7e-18 96.7 107 49.5
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.7e-18 96.7 146 52.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.7e-18 96.7 167 56.3
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 2.7e-18 96.7 174 54.6
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.7e-18 95.9 131 51.9
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 4.7e-18 95.9 148 52.7
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 6.1e-18 95.5 145 53.8
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 6.1e-18 95.5 145 53.8
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 8.0e-18 95.1 131 53.4
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.0e-17 94.7 109 50.5
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.8e-17 94.0 173 48.0
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.8e-17 94.0 144 50.7
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 1.8e-17 94.0 107 50.5
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 2.3e-17 93.6 145 53.1
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.3e-17 93.6 109 50.5
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.3e-17 93.6 109 50.5
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.3e-17 93.6 109 50.5
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 2.3e-17 93.6 108 49.1
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 3.0e-17 93.2 155 49.0
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 3.0e-17 93.2 101 52.5
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.0e-17 93.2 165 57.6
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 4.0e-17 92.8 102 50.0
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 4.0e-17 92.8 108 48.1
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 4.0e-17 92.8 147 49.7
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 4.0e-17 92.8 143 53.1
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 4.0e-17 92.8 140 49.3
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 4.0e-17 92.8 161 54.7
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 4.0e-17 92.8 168 54.8
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 4.0e-17 92.8 165 54.5
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 5.2e-17 92.4 168 44.6
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 5.2e-17 92.4 98 52.0
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 5.2e-17 92.4 168 50.0
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 5.2e-17 92.4 137 52.6
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 6.8e-17 92.0 150 48.0
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 6.8e-17 92.0 136 48.5
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 6.8e-17 92.0 163 53.4
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 6.8e-17 92.0 150 43.3
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 8.8e-17 91.7 147 48.3
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 8.8e-17 91.7 133 53.4
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-16 91.3 153 47.7
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.5e-16 90.9 177 45.8
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.5e-16 90.9 167 54.5
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.5e-16 90.9 151 49.0
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.0e-16 90.5 166 54.8
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.0e-16 90.5 166 54.8
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.6e-16 90.1 98 51.0
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.6e-16 90.1 98 51.0
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 2.6e-16 90.1 192 43.2
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 2.6e-16 90.1 140 51.4
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.4e-16 89.7 106 48.1
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.4e-16 89.7 146 50.0
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.4e-16 89.4 106 49.1
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 4.4e-16 89.4 145 49.7
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.4e-16 89.4 106 48.1
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 5.7e-16 89.0 187 40.6
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 5.7e-16 89.0 101 48.5
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 7.5e-16 88.6 142 45.8
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 9.8e-16 88.2 150 47.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 9.8e-16 88.2 105 48.6
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 9.8e-16 88.2 146 42.5
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 9.8e-16 88.2 146 42.5
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.8e-16 88.2 131 53.4
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 9.8e-16 88.2 136 50.7
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 9.8e-16 88.2 109 48.6
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.3e-15 87.8 167 53.9
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.3e-15 87.8 133 51.1
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 1.3e-15 87.8 157 49.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.7e-15 87.4 164 50.0
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 1.7e-15 87.4 105 48.6
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.7e-15 87.4 168 54.2
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.2e-15 87.0 160 43.8
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.2e-15 87.0 136 50.0
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.2e-15 87.0 136 50.0
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 2.2e-15 87.0 133 52.6
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.2e-15 87.0 107 47.7
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.7e-15 86.3 140 47.1
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 4.8e-15 85.9 144 48.6
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 4.8e-15 85.9 144 46.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 4.8e-15 85.9 144 48.6
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 8.3e-15 85.1 155 47.1
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 8.3e-15 85.1 150 46.7
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 8.3e-15 85.1 150 46.7
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 8.3e-15 85.1 150 46.7
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 8.3e-15 85.1 98 49.0
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.1e-14 84.7 172 48.3
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.1e-14 84.7 143 48.3
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.4e-14 84.3 146 49.3
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.4e-14 83.6 168 52.4
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.4e-14 83.6 137 51.1
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.4e-14 83.6 138 47.8
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.4e-14 83.6 145 49.0
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.1e-14 82.8 145 47.6
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 4.1e-14 82.8 146 50.0
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 5.4e-14 82.4 137 51.1
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 5.4e-14 82.4 144 47.9
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.4e-14 82.4 150 48.7
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 7.0e-14 82.0 104 45.2
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 9.1e-14 81.6 152 46.1
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.6e-13 80.9 143 49.0
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.6e-13 80.9 98 49.0
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.6e-13 80.9 98 49.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 4.5e-13 79.3 89 50.6
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 5.9e-13 79.0 143 44.1
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 7.7e-13 78.6 143 48.3
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.3e-12 77.8 100 48.0
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.9e-12 76.6 89 50.6
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.8e-12 76.3 136 51.5
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.1e-11 74.7 101 47.5
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.9e-11 73.9 146 43.8
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 1.9e-11 73.9 94 47.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.9e-11 73.9 144 37.5
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 9.5e-11 71.6 141 47.5
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 6.1e-10 68.9 87 46.0
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.4e-09 67.8 73 69.9
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 3.0e-09 66.6 111 42.3
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.0e-08 63.9 44 68.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 9.8e-08 61.6 125 44.0
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 1.3e-07 61.2 34 82.4
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.7e-07 60.8 96 50.0
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 2.2e-07 60.5 125 37.6
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 3.1e-06 56.6 39 71.8


User provided reference genes

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