Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 9.9e-170 600.1 325 100.0
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 5.0e-89 332.0 322 56.8
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.4e-78 297.4 362 55.0
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 1.6e-66 257.3 375 43.2
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 4.9e-60 235.7 343 41.1
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.4e-59 234.2 271 49.4
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.2e-53 214.5 309 46.9
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.8e-49 200.7 328 38.7
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 6.2e-47 192.2 317 37.9
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.8e-46 190.7 274 42.3
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 5.8e-45 185.7 326 38.3
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 2.5e-43 180.3 298 38.6
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.0e-41 174.9 331 35.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.9e-40 170.6 273 39.9
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 4.3e-40 169.5 272 35.7
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.1e-39 167.2 307 36.8
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 2.1e-39 167.2 269 39.4
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 8.2e-39 165.2 266 35.7
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.4e-38 164.5 256 39.1
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.8e-38 164.1 302 38.1
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.5e-32 144.4 269 34.6
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 1.9e-32 144.1 184 45.1
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-31 141.4 279 34.4
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.3e-31 141.4 211 39.8
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.6e-31 141.0 323 32.8
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 5.3e-30 136.0 219 39.7
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.5e-29 134.4 329 33.4
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.5e-29 134.4 329 33.4
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.0e-29 134.0 260 33.5
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.9e-29 132.5 310 31.9
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 5.9e-29 132.5 295 33.6
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.7e-28 131.0 248 36.7
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.7e-28 131.0 329 31.0
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 6.5e-28 129.0 298 30.9
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 8.5e-28 128.6 295 32.9
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.2e-27 126.3 339 30.7
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 9.4e-27 125.2 306 32.4
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.2e-26 124.8 339 29.5
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.2e-26 124.8 311 29.9
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.0e-25 121.7 237 34.6
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 2.3e-25 120.6 292 29.5
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 3.0e-25 120.2 275 34.5
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 6.7e-25 119.0 261 31.4
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.5e-24 117.9 208 36.1
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 3.3e-24 116.7 284 31.0
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 7.4e-24 115.5 351 29.9
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.7e-23 114.4 281 31.3
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.4e-22 111.3 307 31.6
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.4e-22 111.3 365 28.5
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.9e-22 109.0 347 28.2
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 3.4e-21 106.7 311 29.6
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 3.4e-21 106.7 305 28.9
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 5.9e-21 105.9 311 30.5
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 5.9e-21 105.9 288 29.5
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.3e-20 104.8 133 45.9
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.3e-20 104.8 252 33.7
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 2.2e-20 104.0 257 31.5
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.9e-20 103.6 270 30.7
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.9e-20 103.6 257 31.5
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 6.5e-20 102.4 259 31.3
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 6.5e-20 102.4 285 28.8
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 8.5e-20 102.1 271 29.5
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.4e-19 101.3 257 30.4
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 3.2e-19 100.1 291 29.6
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 9.4e-19 98.6 256 28.9
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.2e-18 98.2 256 28.1
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.6e-18 97.8 267 27.7
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 2.1e-18 97.4 252 28.2
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 4.7e-18 96.3 300 27.0
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.1e-18 95.9 319 27.3
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.8e-17 94.4 308 28.9
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 6.7e-17 92.4 253 29.6
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 6.7e-17 92.4 174 37.4
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.1e-16 91.7 252 29.4
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.5e-16 91.3 257 29.2
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 2.6e-16 90.5 261 29.1
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.6e-16 90.5 257 28.4
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 3.3e-16 90.1 261 28.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.3e-16 90.1 337 25.2
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 5.7e-16 89.4 261 29.1
HanXRQChr04g0106931 Helianthus annuus HOM05D000004 ORTHO05D000002 9.7e-16 88.6 49 93.9
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 1.3e-15 88.2 113 44.2
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 1.7e-15 87.8 268 27.6
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 3.7e-15 86.7 146 36.3
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.4e-14 84.7 360 25.0
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 2.4e-14 84.0 209 32.1
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.0e-12 78.6 236 28.0
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.3e-12 78.2 233 28.8
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 2.2e-12 77.4 210 31.4
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.9e-12 77.0 210 29.5
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 3.8e-12 76.6 187 32.1
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 8.5e-12 75.5 105 44.8
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.5e-12 75.5 209 27.3
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 2.5e-11 73.9 177 32.2
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 3.2e-11 73.6 139 33.1
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.2e-11 73.6 202 30.2
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 7.2e-11 72.4 121 39.7
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.7e-10 70.5 210 29.0
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.0e-09 68.6 58 62.1
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 3.0e-09 67.0 228 27.6
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 3.0e-09 67.0 48 66.7
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.2e-08 65.1 155 28.4
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 1.5e-08 64.7 169 29.6
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 2.0e-08 64.3 209 28.2
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.5e-08 62.4 282 25.2
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 9.7e-08 62.0 144 31.9
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.7e-07 61.2 148 30.4
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 2.2e-07 60.8 99 38.4
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 4.8e-07 59.7 139 33.8
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.1e-06 58.5 148 29.7
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.4e-06 58.2 139 32.4
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.4e-06 58.2 213 26.8
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 1.8e-06 57.8 139 29.5
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 2.4e-06 57.4 165 29.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 2.4e-06 57.4 148 31.8
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 2.4e-06 57.4 59 50.8
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 2.4e-06 57.4 59 50.8
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 2.4e-06 57.4 148 31.8
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 2.4e-06 57.4 59 50.8
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 2.4e-06 57.4 156 32.1
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.4e-06 57.4 169 26.0
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 3.1e-06 57.0 146 27.4
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 4.1e-06 56.6 61 49.2
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 4.1e-06 56.6 155 32.3
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 7.0e-06 55.8 64 48.4
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 7.0e-06 55.8 167 29.9
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 9.1e-06 55.5 136 29.4


User provided reference genes

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