Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 3.5e-176 622.1 462 100.0
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 5.4e-121 438.7 468 70.1
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 8.1e-109 398.3 463 61.1
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.2e-99 367.9 472 50.0
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 6.7e-95 352.1 480 54.4
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.0e-91 340.5 478 59.6
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.3e-90 337.8 494 48.2
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 4.2e-89 332.8 477 54.7
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.6e-88 330.9 463 51.0
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.0e-87 328.2 494 45.7
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.9e-87 326.2 472 47.9
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 2.0e-86 323.9 481 45.5
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 3.3e-86 323.2 474 47.7
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.2e-85 320.5 483 48.9
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 4.1e-84 316.2 471 50.5
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 4.1e-84 316.2 484 45.9
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.9e-84 315.5 470 48.1
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.2e-83 314.7 493 49.3
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.5e-83 314.3 486 54.5
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.3e-82 311.2 471 50.1
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 1.3e-82 311.2 480 55.2
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 2.2e-82 310.5 486 49.0
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 2.2e-82 310.5 486 49.0
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.9e-82 310.1 481 60.7
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 3.8e-82 309.7 492 51.2
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.4e-81 307.8 483 44.9
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.9e-81 307.4 475 44.2
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.2e-81 306.6 488 52.9
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 4.2e-81 306.2 489 48.9
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 5.5e-81 305.8 488 48.6
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 5.5e-81 305.8 485 44.7
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 9.4e-81 305.1 481 42.4
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 9.4e-81 305.1 480 57.3
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.4e-81 305.1 486 48.4
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 9.4e-81 305.1 479 57.4
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 9.4e-81 305.1 470 44.5
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.2e-80 304.7 486 44.9
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 4.7e-80 302.8 497 53.9
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 4.7e-80 302.8 489 50.7
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.8e-79 300.8 487 50.1
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 8.8e-79 298.5 488 47.3
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 1.5e-78 297.7 477 51.8
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 2.0e-78 297.4 481 42.8
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 3.3e-78 296.6 490 42.0
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.4e-78 296.2 490 48.0
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 7.4e-78 295.4 468 49.6
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 9.7e-78 295.0 468 44.7
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.3e-77 294.7 462 50.6
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 3.7e-77 293.1 487 41.9
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.8e-77 292.7 485 47.6
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.1e-76 291.6 462 44.6
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.8e-76 290.8 503 52.3
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.4e-76 290.4 463 49.7
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 3.1e-76 290.0 472 50.4
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 4.1e-76 289.7 477 45.9
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 7.0e-76 288.9 481 49.9
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 7.0e-76 288.9 475 58.7
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 9.1e-76 288.5 494 53.0
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 1.2e-75 288.1 496 53.2
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.6e-75 287.7 491 42.0
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.0e-75 287.3 486 46.1
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.0e-75 287.3 472 49.2
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 2.0e-75 287.3 486 49.8
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 2.0e-75 287.3 467 46.5
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.5e-75 286.2 487 42.3
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 7.7e-75 285.4 472 54.7
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.0e-74 285.0 489 49.3
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.0e-74 285.0 493 44.8
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.0e-74 285.0 473 44.4
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 1.7e-74 284.3 479 47.2
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.7e-74 284.3 486 44.2
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 2.2e-74 283.9 460 52.4
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 2.9e-74 283.5 481 46.6
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 5.0e-74 282.7 484 41.7
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 5.0e-74 282.7 476 48.1
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 6.5e-74 282.3 484 43.8
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.1e-73 281.6 473 44.8
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 1.5e-73 281.2 484 43.4
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.9e-73 280.8 479 57.8
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.9e-73 280.8 471 52.2
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.5e-73 280.4 471 52.0
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.5e-73 279.3 480 41.7
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 7.2e-73 278.9 482 40.7
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 9.4e-73 278.5 472 59.5
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.2e-72 278.1 468 44.4
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 2.7e-72 276.9 492 43.7
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 3.6e-72 276.6 474 50.0
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 4.7e-72 276.2 484 40.5
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.1e-72 275.8 477 39.6
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 6.1e-72 275.8 478 49.2
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 8.0e-72 275.4 478 42.1
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.0e-71 275.0 522 53.8
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.0e-71 275.0 484 41.9
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.4e-71 274.6 468 54.1
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 2.3e-71 273.9 483 47.6
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.3e-71 273.9 473 45.5
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 4.0e-71 273.1 499 42.3
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 5.2e-71 272.7 483 44.5
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.5e-70 271.2 470 41.5
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 2.0e-70 270.8 443 44.9
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 3.3e-70 270.0 486 46.3
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 4.4e-70 269.6 498 44.2
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 4.4e-70 269.6 484 47.5
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 1.7e-69 267.7 471 39.5
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 8.2e-69 265.4 239 61.5
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 3.1e-68 263.5 475 51.8
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 9.1e-68 261.9 502 43.0
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 1.6e-67 261.2 470 57.4
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 2.0e-67 260.8 495 39.0
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.0e-66 258.5 460 59.1
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.0e-66 258.5 487 43.5
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.3e-66 258.1 473 51.4
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 2.2e-66 257.3 483 39.3
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.9e-66 256.9 483 39.1
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 2.9e-66 256.9 221 65.2
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 8.0e-64 248.8 482 39.6
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 8.0e-64 248.8 482 39.6
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 8.0e-64 248.8 482 39.6
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 2.3e-63 247.3 482 38.4
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 3.0e-63 246.9 483 41.4
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 4.0e-63 246.5 484 38.6
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.5e-62 244.6 470 50.4
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-62 244.2 472 43.0
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.6e-62 243.8 246 57.7
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 3.4e-62 243.4 483 39.1
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 7.5e-62 242.3 482 39.4
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 7.5e-62 242.3 482 39.4
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.7e-61 241.1 472 39.6
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.8e-61 240.4 482 41.5
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 4.8e-61 239.6 475 42.5
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 4.1e-60 236.5 491 37.5
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 5.4e-60 236.1 485 38.1
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.0e-59 234.2 500 36.4
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.7e-58 231.1 450 38.0
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.7e-58 231.1 474 42.8
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.9e-58 230.3 468 37.8
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 2.9e-58 230.3 477 37.1
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 3.8e-58 229.9 457 46.0
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 8.6e-58 228.8 470 38.7
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 8.0e-56 222.2 464 37.5
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 9.2e-52 208.8 486 37.2
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.7e-48 196.4 503 34.6
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.4e-47 194.9 477 44.2
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.3e-47 194.1 505 34.7
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 6.8e-47 192.6 466 37.3
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 6.8e-47 192.6 466 37.3
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 2.0e-46 191.0 466 37.1
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 4.4e-46 189.9 192 57.8
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 8.3e-45 185.7 462 39.4
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.4e-44 184.9 150 65.3
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 9.2e-44 182.2 244 48.4
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.8e-40 170.6 383 36.8
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 3.2e-36 157.1 498 39.0
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 9.2e-36 155.6 471 31.8
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.2e-35 155.2 375 34.4
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 1.8e-31 141.4 369 33.3
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.2e-30 138.7 173 50.3
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.4e-30 136.7 86 75.6
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 1.5e-25 121.7 128 46.9
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-23 115.5 101 61.4
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.1e-19 101.3 111 47.7
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 7.3e-17 92.8 89 59.6
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 2.6e-14 84.3 82 59.8
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.6e-14 84.3 114 52.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 3.4e-14 84.0 86 52.3
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 1.3e-13 82.0 111 49.5
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-13 82.0 102 52.9
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.3e-13 82.0 102 52.9
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 3.8e-13 80.5 110 47.3
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 4.9e-13 80.1 119 40.3
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 6.4e-13 79.7 116 43.1
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 1.6e-11 75.1 165 33.3
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.0e-10 72.4 92 43.5
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.0e-10 72.4 115 40.9
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 8.7e-10 69.3 68 51.5
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 7.3e-09 66.2 67 49.3
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 1.1e-07 62.4 122 34.4
unitig_88.g27675 Utricularia gibba HOM05D002258 ORTHO05D002539 2.0e-06 58.2 122 32.8
Duzib170G1020 Durio zibethinus HOM05D002258 ORTHO05D002539 4.5e-06 57.0 159 28.9
Nitab4.5_0002797g0030 Nicotiana tabacum HOM05D002258 ORTHO05D002539 4.5e-06 57.0 137 32.1
Nitab4.5_0006858g0010 Nicotiana tabacum HOM05D002258 ORTHO05D002539 9.9e-06 55.8 137 32.8
THA.LOC104826282 Tarenaya hassleriana HOM05D002258 ORTHO05D002539 9.9e-06 55.8 127 34.6


User provided reference genes

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