Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 0.0e+00 1524.6 794 100.0
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 0.0e+00 1203.3 728 86.7
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 0.0e+00 1171.4 727 86.1
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 7.3e-307 1057.0 717 76.8
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 4.7e-306 1054.3 728 75.1
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 6.4e-303 1043.9 732 75.4
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 5.4e-302 1040.8 738 74.0
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 3.9e-300 1034.6 732 75.3
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 5.0e-300 1034.2 783 70.6
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 1.1e-299 1033.1 736 73.9
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 5.6e-299 1030.8 729 74.5
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.0e-297 1024.6 734 74.8
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 3.4e-296 1021.5 737 75.6
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 7.5e-296 1020.4 731 74.3
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 2.9e-295 1018.5 734 73.6
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 4.9e-295 1017.7 739 72.8
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.1e-294 1016.5 734 74.3
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 9.2e-294 1013.4 749 74.4
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 3.5e-293 1011.5 736 71.9
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 3.0e-292 1008.4 732 75.0
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 9.5e-291 1003.4 745 73.8
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 6.2e-290 1000.7 737 72.2
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 6.2e-290 1000.7 737 72.0
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.1e-289 1000.0 703 73.1
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 1.8e-289 999.2 726 72.2
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 8.9e-289 996.9 726 72.2
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 8.9e-289 996.9 755 70.6
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 9.8e-288 993.4 730 72.3
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 6.4e-287 990.7 728 73.5
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.1e-286 989.9 730 72.1
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 1.1e-286 989.9 725 74.1
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 1.4e-286 989.6 718 72.7
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.2e-285 986.5 729 71.7
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.6e-285 986.1 736 72.1
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 6.0e-285 984.2 727 72.2
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 3.0e-284 981.9 720 74.3
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 5.1e-284 981.1 685 75.0
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 7.3e-283 977.2 718 74.2
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 7.3e-283 977.2 779 69.4
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 1.2e-282 976.5 721 72.4
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 3.6e-282 974.9 733 72.4
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 4.7e-282 974.5 727 71.3
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 8.4e-279 963.8 717 72.1
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 1.1e-278 963.4 723 72.2
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 4.6e-277 958.0 789 65.8
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 6.0e-277 957.6 688 73.5
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 5.1e-276 954.5 726 70.1
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 1.9e-275 952.6 669 74.4
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.9e-275 952.6 709 70.9
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 3.3e-275 951.8 726 70.2
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 4.3e-275 951.4 706 72.2
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 7.3e-275 950.7 720 70.7
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 2.8e-274 948.7 733 69.4
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 4.0e-273 944.9 696 70.5
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.5e-272 943.0 728 69.6
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 3.4e-272 941.8 728 69.6
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.3e-271 939.9 685 71.1
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 6.4e-271 937.6 641 76.3
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 3.2e-270 935.3 576 80.0
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 7.1e-270 934.1 672 72.6
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 1.2e-269 933.3 766 65.8
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 3.5e-269 931.8 800 65.6
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 7.8e-269 930.6 717 68.5
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 7.8e-269 930.6 741 69.9
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 6.6e-268 927.5 722 69.9
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.1e-267 926.8 713 69.7
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.5e-267 926.4 729 68.6
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.9e-267 926.0 724 67.8
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 2.5e-267 925.6 755 68.2
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 9.6e-267 923.7 732 70.4
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 9.6e-267 923.7 663 72.5
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.8e-265 919.5 730 69.2
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 2.4e-265 919.1 613 75.5
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 3.1e-265 918.7 720 69.4
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 1.5e-264 916.4 724 66.7
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 4.5e-264 914.8 722 69.5
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 1.7e-263 912.9 710 69.9
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 2.2e-263 912.5 723 69.6
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 1.8e-260 902.9 728 68.7
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.8e-260 902.9 726 68.3
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 2.3e-260 902.5 728 68.7
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 7.4e-259 897.5 736 67.4
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 3.6e-258 895.2 622 74.9
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 9.0e-257 890.6 647 71.1
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.5e-256 889.8 649 70.9
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.0e-256 889.4 731 68.0
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 9.9e-256 887.1 665 68.9
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-254 883.2 504 84.5
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.9e-254 882.9 519 81.1
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.7e-250 868.6 744 66.0
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 2.1e-242 842.8 524 79.0
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 8.5e-239 830.9 798 58.5
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 3.0e-236 822.4 725 63.0
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.1e-225 787.3 745 57.7
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.1e-225 784.3 627 69.2
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 2.1e-221 773.1 668 61.8
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 8.2e-218 761.1 732 60.2
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.3e-215 753.8 611 62.8
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 8.8e-212 741.1 681 58.9
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 5.4e-201 705.3 501 68.5
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.4e-195 686.0 408 80.1
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.6e-184 649.0 693 55.7
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.3e-183 647.5 345 88.1
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 1.1e-177 627.9 547 55.6
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 4.1e-169 599.4 500 57.8
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 5.1e-167 592.4 522 55.7
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.7e-162 577.4 360 77.8
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 7.8e-160 568.5 551 61.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.7e-154 550.8 541 60.4
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 2.3e-135 487.3 502 50.2
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.2e-123 448.4 560 44.8
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 6.5e-122 442.6 496 52.2
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.1e-118 431.8 254 77.6
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 4.5e-107 393.3 731 36.8
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.7e-101 374.8 540 39.6
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.7e-101 374.8 214 84.1
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 9.4e-97 359.0 378 59.3
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 2.0e-91 341.3 176 90.9
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 3.8e-82 310.5 263 62.7
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.1e-68 263.8 153 80.4
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.3e-66 258.1 364 51.1
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.0e-58 231.1 172 65.7
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-49 202.2 312 43.9
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.5e-46 192.2 101 91.1
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.2e-36 157.5 242 44.2
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.2e-35 156.0 230 45.2
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.1e-28 132.9 295 39.0
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 3.0e-26 124.8 228 50.0
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.7e-24 117.9 96 61.5
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 6.2e-24 117.1 89 69.7
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.6e-14 85.1 213 41.8
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 8.4e-13 80.1 90 52.2
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.5e-11 74.7 164 37.2
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.9e-10 71.2 163 35.0
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 6.7e-10 70.5 99 48.5
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.2e-08 65.5 95 45.3
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.3e-08 63.9 273 32.2
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 7.7e-06 57.0 79 62.0


User provided reference genes

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