Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0075641 Helianthus annuus HOM05D006209 ORTHO05D007645 2.5e-53 211.8 108 100.0
HanXRQChr10g0296031 Helianthus annuus HOM05D006209 ORTHO05D007645 2.6e-42 175.3 97 92.8
Ciclev10020078m.g Citrus clementina HOM05D006209 ORTHO05D007645 2.9e-41 171.8 97 91.8
Aqoxy5G03742 Aquilegia oxysepala HOM05D006209 ORTHO05D007645 3.8e-41 171.4 97 90.7
CSS0022134 Camellia sinensis var. sinensis HOM05D006209 ORTHO05D007645 3.8e-41 171.4 97 90.7
Dinv38524 Davidia involucrata HOM05D006209 ORTHO05D007645 3.8e-41 171.4 97 90.7
Lj5C130T5 Lonicera japonica HOM05D006209 ORTHO05D007645 3.8e-41 171.4 97 90.7
Rhsim08G0178000 Rhododendron simsii HOM05D006209 ORTHO05D007645 3.8e-41 171.4 97 90.7
ECA232G4716 Erigeron canadensis HOM05D006209 ORTHO05D007645 4.9e-41 171.0 97 91.8
vmacro19294 Vaccinium macrocarpon HOM05D006209 ORTHO05D007645 4.9e-41 171.0 97 89.7
Gohir.D03G109100 Gossypium hirsutum HOM05D006209 ORTHO05D007645 6.5e-41 170.6 97 88.7
Gorai.003G115100 Gossypium raimondii HOM05D006209 ORTHO05D007645 6.5e-41 170.6 97 88.7
Prupe.5G165300 Prunus persica HOM05D006209 ORTHO05D007645 8.4e-41 170.2 97 89.7
PGR083G0853 Punica granatum HOM05D006209 ORTHO05D007645 8.4e-41 170.2 97 89.7
COL.COLO4_36757 Corchorus olitorius HOM05D006209 ORTHO05D007645 1.4e-40 169.5 97 89.7
SalBow5G0732 Salvia bowleyana HOM05D006209 ORTHO05D007645 1.4e-40 169.5 97 89.7
SalBow5G2378 Salvia bowleyana HOM05D006209 ORTHO05D007645 1.4e-40 169.5 97 89.7
BcaC09g50838 Brassica carinata HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
BcaNung07359 Brassica carinata HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
Gohir.A03G057200 Gossypium hirsutum HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 87.6
Oeu040860.1 Olea europaea HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
Sp7g22690 Schrenkiella parvula HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
THA.LOC104800398 Tarenaya hassleriana HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
THA.LOC104824986 Tarenaya hassleriana HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 88.7
TWI14G0288 Tripterygium wilfordii HOM05D006209 ORTHO05D007645 1.9e-40 169.1 97 89.7
Thhalv10025089m.g Eutrema salsugineum HOM05D006209 ORTHO05D007645 2.5e-40 168.7 97 87.6
Hma1.2p1_0046F.1_g027160 Hydrangea macrophylla HOM05D006209 ORTHO05D007645 2.5e-40 168.7 97 88.7
Lj1g0021386 Lotus japonicus HOM05D006209 ORTHO05D007645 2.5e-40 168.7 97 88.7
Potri.012G086400 Populus trichocarpa HOM05D006209 ORTHO05D007645 2.5e-40 168.7 97 86.6
Potri.015G084900 Populus trichocarpa HOM05D006209 ORTHO05D007645 2.5e-40 168.7 97 86.6
Sabra15G0107900 Salix brachista HOM05D006209 ORTHO05D007645 2.5e-40 168.7 97 86.6
MD06G1165600 Malus domestica HOM05D006209 ORTHO05D007645 3.2e-40 168.3 97 88.7
Manes.06G110500 Manihot esculenta HOM05D006209 ORTHO05D007645 3.2e-40 168.3 97 89.7
Nn4g22589 Nelumbo nucifera HOM05D006209 ORTHO05D007645 3.2e-40 168.3 97 89.7
BraA01t01539Z Brassica rapa HOM05D006209 ORTHO05D007645 4.2e-40 167.9 97 87.6
Cfa019222 Carpinus fangiana HOM05D006209 ORTHO05D007645 4.2e-40 167.9 97 88.7
SGA_v2.0_scaffold25G10798 Striga asiatica HOM05D006209 ORTHO05D007645 4.2e-40 167.9 97 87.6
Atru.chr9.2581 Acer truncatum HOM05D006209 ORTHO05D007645 5.5e-40 167.5 97 89.7
CiPaw.11G019400 Carya illinoinensis HOM05D006209 ORTHO05D007645 5.5e-40 167.5 97 89.7
Migut.O00160 Erythranthe guttata HOM05D006209 ORTHO05D007645 5.5e-40 167.5 97 86.6
Eucgr.B00217 Eucalyptus grandis HOM05D006209 ORTHO05D007645 5.5e-40 167.5 97 86.6
arahy.Tifrunner.gnm1.ann1.5EQE0P Arachis hypogaea HOM05D006209 ORTHO05D007645 7.1e-40 167.2 97 87.6
arahy.Tifrunner.gnm1.ann1.S747I7 Arachis hypogaea HOM05D006209 ORTHO05D007645 7.1e-40 167.2 97 87.6
Lsat_1_v5_gn_4_77340 Lactuca sativa HOM05D006209 ORTHO05D007645 7.1e-40 167.2 97 88.7
Lalb_Chr23g0273351 Lupinus albus HOM05D006209 ORTHO05D007645 7.1e-40 167.2 97 88.7
Cc04_g11480 Coffea canephora HOM05D006209 ORTHO05D007645 9.3e-40 166.8 97 87.6
GSVIVG01007643001 Vitis vinifera HOM05D006209 ORTHO05D007645 9.3e-40 166.8 97 87.6
AT4G24710 Arabidopsis thaliana HOM05D006209 ORTHO05D007645 1.2e-39 166.4 97 86.6
MSTRG.11496 Avicennia marina HOM05D006209 ORTHO05D007645 1.2e-39 166.4 97 86.6
Carub.0007s1635 Capsella rubella HOM05D006209 ORTHO05D007645 1.2e-39 166.4 97 86.6
CARHR232090 Cardamine hirsuta HOM05D006209 ORTHO05D007645 1.2e-39 166.4 97 86.6
ClCG03G003010 Citrullus lanatus HOM05D006209 ORTHO05D007645 1.6e-39 166.0 97 86.6
MELO3C002299.2 Cucumis melo HOM05D006209 ORTHO05D007645 1.6e-39 166.0 97 86.6
CsaV3_1G008850 Cucumis sativus L. HOM05D006209 ORTHO05D007645 1.6e-39 166.0 97 86.6
DCAR_021592 Daucus carota HOM05D006209 ORTHO05D007645 1.6e-39 166.0 97 87.6
Sed0008195 Sechium edule HOM05D006209 ORTHO05D007645 1.6e-39 166.0 97 86.6
Nitab4.5_0000025g0360 Nicotiana tabacum HOM05D006209 ORTHO05D007645 2.1e-39 165.6 97 88.7
Nitab4.5_0001566g0050 Nicotiana tabacum HOM05D006209 ORTHO05D007645 2.1e-39 165.6 97 88.7
PSO063G1215 Papaver somniferum HOM05D006209 ORTHO05D007645 2.1e-39 165.6 97 87.6
PSO754G0074 Papaver somniferum HOM05D006209 ORTHO05D007645 2.1e-39 165.6 97 87.6
Sc12g0004970 Simmondsia chinensis HOM05D006209 ORTHO05D007645 2.7e-39 165.2 97 87.6
Aa31LG4G9900 Aethionema arabicum HOM05D006209 ORTHO05D007645 3.5e-39 164.9 97 86.6
Glyma.04G188400 Glycine max HOM05D006209 ORTHO05D007645 3.5e-39 164.9 97 87.6
SHI17264 Sapria himalayana HOM05D006209 ORTHO05D007645 3.5e-39 164.9 97 84.5
TAR371G0588 Trochodendron aralioides HOM05D006209 ORTHO05D007645 3.5e-39 164.9 97 87.6
Ca_16138_v3 Cicer arietinum L. HOM05D006209 ORTHO05D007645 4.6e-39 164.5 97 87.6
Ca_30305_v3 Cicer arietinum L. HOM05D006209 ORTHO05D007645 4.6e-39 164.5 97 87.6
MD14G1171200 Malus domestica HOM05D006209 ORTHO05D007645 4.6e-39 164.5 97 86.6
Ah.11g051190 Amaranthus hybridus HOM05D006209 ORTHO05D007645 6.0e-39 164.1 97 86.6
TPR.G25676 Trifolium pratense HOM05D006209 ORTHO05D007645 7.9e-39 163.7 97 86.6
Os04g0479000 Oryza sativa ssp. japonica HOM05D006209 ORTHO05D007645 1.0e-38 163.3 97 87.6
QL10p006868 Quercus lobata HOM05D006209 ORTHO05D007645 1.0e-38 163.3 97 87.6
Zm00001eb424890 Zea mays HOM05D006209 ORTHO05D007645 1.0e-38 163.3 105 82.9
CDE09G0716 Ceratophyllum demersum HOM05D006209 ORTHO05D007645 1.3e-38 162.9 97 87.6
MBI06_g16065_MAGBIO Magnolia biondii HOM05D006209 ORTHO05D007645 1.3e-38 162.9 97 86.6
Medtr3g076930 Medicago truncatula HOM05D006209 ORTHO05D007645 1.3e-38 162.9 97 86.6
Phvul.009G173800 Phaseolus vulgaris HOM05D006209 ORTHO05D007645 1.3e-38 162.9 97 85.6
RcHm_v2.0_Chr7g0192541 Rosa chinensis HOM05D006209 ORTHO05D007645 1.3e-38 162.9 97 86.6
VMungo1309G1487 Vigna mungo HOM05D006209 ORTHO05D007645 1.3e-38 162.9 97 85.6
FvH4_5g06320 Fragaria vesca HOM05D006209 ORTHO05D007645 1.8e-38 162.5 97 86.6
Glyma.06G177400 Glycine max HOM05D006209 ORTHO05D007645 1.8e-38 162.5 97 86.6
AUR62028724 Chenopodium quinoa HOM05D006209 ORTHO05D007645 2.3e-38 162.2 97 85.6
EL10Ac5g10654 Beta vulgaris HOM05D006209 ORTHO05D007645 3.0e-38 161.8 97 85.6
Psat5g118240 Pisum sativum HOM05D006209 ORTHO05D007645 3.0e-38 161.8 97 86.6
CANSAT80G1924 Cannabis sativa HOM05D006209 ORTHO05D007645 5.1e-38 161.0 97 85.6
CAN.G648.11 Capsicum annuum HOM05D006209 ORTHO05D007645 6.7e-38 160.6 97 86.6
AUR62008142 Chenopodium quinoa HOM05D006209 ORTHO05D007645 8.7e-38 160.2 97 84.5
Hund02788 Selenicereus undatus HOM05D006209 ORTHO05D007645 8.7e-38 160.2 97 84.5
Sopen12g027590 Solanum pennellii HOM05D006209 ORTHO05D007645 1.1e-37 159.8 97 85.6
HPP92_008110 Vanilla planifolia HOM05D006209 ORTHO05D007645 4.3e-37 157.9 97 83.5
ATR0824G215 Amborella trichopoda HOM05D006209 ORTHO05D007645 8.2e-36 153.7 97 80.4
Haze_07590 Corylus avellana HOM05D006209 ORTHO05D007645 9.0e-35 150.2 97 82.5
FAN18G2337 Fragaria x ananassa HOM05D006209 ORTHO05D007645 5.9e-34 147.5 125 67.2
FAN08G2144 Fragaria x ananassa HOM05D006209 ORTHO05D007645 1.3e-33 146.4 103 76.7
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 1.3e-33 146.4 97 76.3
Mapoly0084s0055 Marchantia polymorpha HOM05D006209 ORTHO05D007645 6.5e-33 144.1 97 75.3
MCO05G067 Micromonas commoda HOM05D006209 ORTHO05D007645 1.4e-32 142.9 97 72.2
FAN13G2576 Fragaria x ananassa HOM05D006209 ORTHO05D007645 4.2e-32 141.4 103 73.8
arahy.Tifrunner.gnm1.ann1.3TKR16 Arachis hypogaea HOM05D006209 ORTHO05D007645 2.1e-31 139.0 105 71.4
CBR_g39421 Chara braunii HOM05D006209 ORTHO05D007645 1.0e-30 136.7 97 70.1
Cre02.g117150 Chlamydomonas reinhardtii HOM05D006209 ORTHO05D007645 5.7e-29 131.0 97 71.1
Cpa.g.sc159.17 Carica papaya HOM05D006209 ORTHO05D007645 9.1e-27 123.6 69 91.3
Thecc.03G026100 Theobroma cacao HOM05D006209 ORTHO05D007645 9.1e-27 123.6 69 91.3
arahy.Tifrunner.gnm1.ann1.YY50VQ Arachis hypogaea HOM05D006209 ORTHO05D007645 9.4e-24 113.6 104 61.5
PSO700G0237 Papaver somniferum HOM05D006209 ORTHO05D007645 1.8e-22 109.4 64 89.1
PSO063G4271 Papaver somniferum HOM05D006209 ORTHO05D007645 3.0e-22 108.6 64 87.5
PSO063G5100 Papaver somniferum HOM05D006209 ORTHO05D007645 6.7e-22 107.5 62 88.7
PSO357G0046 Papaver somniferum HOM05D006209 ORTHO05D007645 2.0e-21 105.9 64 84.4
PSO357G0693 Papaver somniferum HOM05D006209 ORTHO05D007645 4.4e-21 104.8 64 84.4
PSO782G2571 Papaver somniferum HOM05D006209 ORTHO05D007645 9.7e-21 103.6 64 82.8
Peaxi162Scf00801g00219 Petunia axillaris HOM05D006209 ORTHO05D007645 7.7e-18 94.0 55 83.6
Solyc12g076340.1 Solanum lycopersicum HOM05D006209 ORTHO05D007645 1.7e-17 92.8 56 82.1
arahy.Tifrunner.gnm1.ann1.XL5ZPG Arachis hypogaea HOM05D006209 ORTHO05D007645 5.7e-13 77.8 97 51.5
unitig_26.g8808 Utricularia gibba HOM05D000111 ORTHO05D007645 1.7e-12 76.3 42 95.2
PRCOL_00006353 Prasinoderma coloniale HOM05D006209 ORTHO05D007645 1.2e-07 60.1 116 31.9
arahy.Tifrunner.gnm1.ann1.32D49K Arachis hypogaea HOM05D006209 ORTHO05D007645 4.0e-06 55.1 40 77.5


User provided reference genes

Program Settings