Gene: Nitab4.5_0001566g0050

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0001566g0050
  • Transcript Identifier Nitab4.5_0001566g0050.1
  • Gene Type Coding gene
  • Location Nitab4.5_0001566 : 455339-468859 : positive

Gene Family Information

  • ID HOM05D006209
  • #Genes/#Species 128/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0001566g0050.1
  • SR1-identifier Nta19g14410.1

Descriptions

  • Description ClpA/B family, ATPase, AAA-type, core, ATPase, AAA-type, conserved site, AAA ATPase domain, P-loop containing nucleoside triphosphate hydrolase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051026
ISO
PLAZA Integrative Orthologychiasma assembly AT4G24710
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination Os04g0479000
GO:0007130
ISO
PLAZA Integrative Orthologysynaptonemal complex assembly AT4G24710
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis AT4G24710
GO:0042138
ISO
PLAZA Integrative Orthologymeiotic DNA double-strand break formation Os04g0479000

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os04g0479000

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus Os04g0479000
GO:0005694
ISO
PLAZA Integrative Orthologychromosome AT4G24710
GO:0000795
ISO
PLAZA Integrative Orthologysynaptonemal complex AT4G24710

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003593 AAA+ ATPase domain
IPR003959 ATPase, AAA-type, core
IPR044539 Pachytene checkpoint protein 2-like
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001270 ClpA/B family
Mapman id Description
13.3.5.5.1.7 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.pachytene checkpoint protein (PCH2/CRC1)